Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G286500.1 | Wheat | nucleus | 94.61 | 95.14 |
| TraesCS5D01G294100.1 | Wheat | nucleus | 97.21 | 88.34 |
| Os09t0506800-02 | Rice | nucleus | 81.04 | 71.48 |
| Zm00001d006089_P002 | Maize | nucleus | 56.88 | 64.15 |
| OQU89747 | Sorghum | plastid | 75.65 | 63.1 |
| PGSC0003DMT400074843 | Potato | cytosol | 54.65 | 52.78 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 59.29 | 50.55 |
| Solyc04g007330.1.1 | Tomato | nucleus | 52.97 | 47.82 |
| KRH31480 | Soybean | nucleus | 42.94 | 46.86 |
| AT1G67370.1 | Thale cress | nucleus | 51.3 | 46.31 |
| KRG97420 | Soybean | nucleus | 51.86 | 45.66 |
| Bra004222.1-P | Field mustard | nucleus | 49.26 | 44.24 |
| CDY01805 | Canola | nucleus | 49.44 | 43.32 |
| CDX96096 | Canola | cytosol | 49.63 | 42.93 |
| CDY28889 | Canola | endoplasmic reticulum, extracellular | 40.33 | 39.67 |
| OQU89777 | Sorghum | nucleus | 51.12 | 38.73 |
Protein Annotations
| MapMan:13.3.6.1.4 | Gene3D:3.30.900.10 | GO:GO:0000003 | GO:GO:0000228 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 | GO:GO:0007129 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009554 | GO:GO:0009556 | GO:GO:0009987 | GO:GO:0016043 | InterPro:HORMA_dom | InterPro:HORMA_dom_sf |
| InterPro:IPR003511 | InterPro:IPR036570 | PFAM:PF02301 | PFscan:PS50815 | PANTHER:PTHR45173 | SUPFAM:SSF56019 |
| EnsemblPlantsGene:TraesCS5B01G285800 | EnsemblPlants:TraesCS5B01G285800.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:471300802..471305374
Molecular Weight (calculated)
60670.8 Da
IEP (calculated)
5.139
GRAVY (calculated)
-0.787
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIKKLMPMD AESRRLIDWM EKGVYDALQK KYLKTLLFCI CEKEEGPMIE EYAFSFSYPN TNGEEVAMNM SRTGSKKNSA TFKSNAAEVT PDQMRSSACK
101: MIRTLVSLMR TLDQMPEERT ILMKLLYYDD ATPEDYEPPF FKGCAENEAV NIWNKNPLKM EVGNVNSKHL VLALKVKSVL DPCDANDANS DDDKMSLGRE
201: SDQDNDLSDT EVRPSEVDRY VVAPNDGNCK GQSGTNSEDE TQDAAHEEEL TAQVRAWICS RDMGTVNASD VLSNYPDISL EMVEDILERL LKDGLLSRAG
301: KDGYAVNKVT DPKTPYIKKE KEVAMHNVTP TEGTKNNDTD VMYMKALYHA LPMDYVTVAK LQGKLDGEAN QTTVRKLMDK MVQDGYIKNS GNRRLGKAVI
401: HSEVTNRKLL EIKKILEVDI SDEMAIDTNA RPAEFDRRDH QITDQEMKDG STNGRFQSVG SDLTRTRELP EQQQNNKDPS RTPTSNRESA TSLESGVLGQ
501: RIRKSLAGEE SMGTPDKRTR KTSMVKEPIL QQVKRQKS
101: MIRTLVSLMR TLDQMPEERT ILMKLLYYDD ATPEDYEPPF FKGCAENEAV NIWNKNPLKM EVGNVNSKHL VLALKVKSVL DPCDANDANS DDDKMSLGRE
201: SDQDNDLSDT EVRPSEVDRY VVAPNDGNCK GQSGTNSEDE TQDAAHEEEL TAQVRAWICS RDMGTVNASD VLSNYPDISL EMVEDILERL LKDGLLSRAG
301: KDGYAVNKVT DPKTPYIKKE KEVAMHNVTP TEGTKNNDTD VMYMKALYHA LPMDYVTVAK LQGKLDGEAN QTTVRKLMDK MVQDGYIKNS GNRRLGKAVI
401: HSEVTNRKLL EIKKILEVDI SDEMAIDTNA RPAEFDRRDH QITDQEMKDG STNGRFQSVG SDLTRTRELP EQQQNNKDPS RTPTSNRESA TSLESGVLGQ
501: RIRKSLAGEE SMGTPDKRTR KTSMVKEPIL QQVKRQKS
001: MVMAQKLKEA EITEQDSLLL TRNLLRIAIF NISYIRGLFP EKYFNDKSVP ALDMKIKKLM PMDAESRRLI DWMEKGVYDA LQRKYLKTLM FSICETVDGP
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN
Arabidopsis Description
ASY1Meiosis-specific protein ASY1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRV8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.