Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G67370.1 | CDY34225 | AT3G22880.1 | 17937504 |
| AT1G67370.1 | CDY46610 | AT3G22880.1 | 17937504 |
| AT1G67370.1 | CDX80742 | AT4G29170.1 | 17937504 |
| AT1G67370.1 | CDY30231 | AT4G29170.1 | 17937504 |
| AT1G67370.1 | CDY47782 | AT4G29170.1 | 17937504 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96096 | Canola | cytosol | 97.72 | 96.46 |
| AT1G67370.1 | Thale cress | nucleus | 76.87 | 79.19 |
| CDY28889 | Canola | endoplasmic reticulum, extracellular | 70.36 | 78.98 |
| VIT_01s0010g03580.t01 | Wine grape | cytosol | 11.73 | 77.42 |
| Solyc04g007330.1.1 | Tomato | nucleus | 58.96 | 60.74 |
| VIT_01s0010g03590.t01 | Wine grape | nucleus | 50.98 | 59.39 |
| KRG97420 | Soybean | nucleus | 58.63 | 58.92 |
| PGSC0003DMT400074843 | Potato | cytosol | 51.47 | 56.73 |
| Os09t0506800-02 | Rice | nucleus | 52.44 | 52.79 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 54.23 | 52.77 |
| TraesCS5D01G294100.1 | Wheat | nucleus | 50.81 | 52.7 |
| KRH31480 | Soybean | nucleus | 42.18 | 52.54 |
| TraesCS5B01G285800.1 | Wheat | nucleus | 43.32 | 49.44 |
| OQU89747 | Sorghum | plastid | 51.3 | 48.84 |
| TraesCS5A01G286500.1 | Wheat | nucleus | 42.51 | 48.78 |
| Zm00001d006089_P002 | Maize | nucleus | 32.9 | 42.35 |
| OQU89777 | Sorghum | nucleus | 36.97 | 31.97 |
| EER89142 | Sorghum | mitochondrion | 12.21 | 17.61 |
| Os12t0606600-01 | Rice | nucleus | 17.43 | 16.96 |
Protein Annotations
| MapMan:13.3.6.1.4 | Gene3D:3.30.900.10 | EnsemblPlants:CDY01805 | ProteinID:CDY01805 | ProteinID:CDY01805.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00112951001 | InterPro:HORMA_dom | InterPro:HORMA_dom_sf | InterPro:IPR003511 |
| InterPro:IPR007526 | InterPro:IPR036570 | PFAM:PF02301 | PFscan:PS50815 | PFscan:PS50934 | PANTHER:PTHR45173 |
| SUPFAM:SSF46785 | SUPFAM:SSF56019 | InterPro:SWIRM | UniParc:UPI0004EE9988 | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
BnaC06g28450D
Coordinates
chrLK031929:-:427822..432416
Molecular Weight (calculated)
69802.3 Da
IEP (calculated)
4.996
GRAVY (calculated)
-0.730
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSKEEADHR YILTWVMAQK LKEAEITEQD SLLLTRNLLR IAIFNISYIR GLFPENYFND KSVPALDMKI KKLLPIDPES RRLIDWMEKG VYDALQKKYL
101: KTLMFCICES VEGPMIEEYS FNFSYSDSDS QDVRMNISRT GTKKHGGTFH STADITQNQM RSSACKMVRT LVQLMRTLDK MPDKRTIVMK LMYYDDVTPP
201: DYEPPFFRGC TEEEAQHVWT KDPLRMEVGN VNSKHLVLTL KVKSVLDPCA DENDDMQDDG KSTGPNSVHD EQPSDSDSEI SQTRETQFLL APVEKQEDDD
301: GEVDEDNTQD PVESQQQLER VKGWINSRHL DTLELTDVLA NFPDISIALT EEIMDQLEKE GVLSKTGKET YTINREKTPW SEFNFVKDEA DGKTASKDEK
401: SIAPEEYMYM KALYHSLPMQ YVTITKLHNM LDGEANQTKV RKLIDRMIQE GYVEDSSNRR LGKRVIHSVV TENKLNEVRK VLATNDDMDV DVDETVNKTN
501: GQDAKLTPAD VSTRGGIHSI GSDLTRTKGR SAMQQNGSVL SEQTISKANN TPMSSNAQPV ASRESFAVKG MAAKICTDAG TDSSQASQDR RYRKTSTVRD
601: PILQYSKRQK SQAN
101: KTLMFCICES VEGPMIEEYS FNFSYSDSDS QDVRMNISRT GTKKHGGTFH STADITQNQM RSSACKMVRT LVQLMRTLDK MPDKRTIVMK LMYYDDVTPP
201: DYEPPFFRGC TEEEAQHVWT KDPLRMEVGN VNSKHLVLTL KVKSVLDPCA DENDDMQDDG KSTGPNSVHD EQPSDSDSEI SQTRETQFLL APVEKQEDDD
301: GEVDEDNTQD PVESQQQLER VKGWINSRHL DTLELTDVLA NFPDISIALT EEIMDQLEKE GVLSKTGKET YTINREKTPW SEFNFVKDEA DGKTASKDEK
401: SIAPEEYMYM KALYHSLPMQ YVTITKLHNM LDGEANQTKV RKLIDRMIQE GYVEDSSNRR LGKRVIHSVV TENKLNEVRK VLATNDDMDV DVDETVNKTN
501: GQDAKLTPAD VSTRGGIHSI GSDLTRTKGR SAMQQNGSVL SEQTISKANN TPMSSNAQPV ASRESFAVKG MAAKICTDAG TDSSQASQDR RYRKTSTVRD
601: PILQYSKRQK SQAN
001: MVMAQKLKEA EITEQDSLLL TRNLLRIAIF NISYIRGLFP EKYFNDKSVP ALDMKIKKLM PMDAESRRLI DWMEKGVYDA LQRKYLKTLM FSICETVDGP
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN
Arabidopsis Description
ASY1Meiosis-specific protein ASY1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRV8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.