Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024159.1-P | Field mustard | cytosol | 72.24 | 99.54 |
| AT4G29170.1 | Thale cress | cytosol | 68.23 | 88.7 |
| KRH74183 | Soybean | cytosol | 55.18 | 75.69 |
| EER98621 | Sorghum | cytosol | 51.84 | 74.88 |
| Os09t0280600-01 | Rice | nucleus | 51.51 | 74.4 |
| VIT_11s0016g02770.t01 | Wine grape | cytosol | 51.17 | 72.86 |
| TraesCS5A01G174300.1 | Wheat | cytosol | 50.17 | 72.46 |
| TraesCS5B01G171700.1 | Wheat | nucleus | 50.17 | 72.46 |
| TraesCS5D01G178900.1 | Wheat | cytosol | 50.17 | 72.46 |
| GSMUA_Achr9P00140_001 | Banana | cytosol | 46.49 | 72.4 |
| CDY47782 | Canola | cytosol, golgi, mitochondrion, plastid | 79.93 | 71.34 |
| Solyc12g008680.1.1 | Tomato | cytosol | 57.19 | 70.66 |
| PGSC0003DMT400000930 | Potato | cytosol, golgi, nucleus | 56.52 | 68.42 |
| CDX80742 | Canola | cytosol | 26.09 | 65.55 |
| Zm00001d005140_P003 | Maize | golgi, mitochondrion, nucleus | 50.17 | 57.92 |
Protein Annotations
| EnsemblPlants:CDY30231 | EnsemblPlantsGene:GSBRNA2T00044858001 | InterPro:Mnd1 | ncoils:Coil | PFAM:PF03962 | ProteinID:CDY30231 |
| ProteinID:CDY30231.1 | SEG:seg | UniParc:UPI0004EE4129 | UniProt:A0A078GXJ6 | MapMan:13.3.6.4.5.1 | : |
Description
BnaA03g49390DBnaA03g49390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXJ6]
Coordinates
chrLK032250:-:435321..437697
Molecular Weight (calculated)
34661.3 Da
IEP (calculated)
6.267
GRAVY (calculated)
-0.597
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MYCRSTMRCV DLLSCMFVRI RPKDPPKSIL RLPQQFSFPT SFFFGERRER CKQSLRYDLI HCWISSFQSK KRGLSLEEKR EKMLQIFYDS QDFFLLKELE
101: KMGPKKGVIS QSVKDVIQSL VDDDLVAKDK IGISVYFWSL PSCAGNQLRS VRQKLESDLQ GSNKKLAELV DQCDALKKGR EDSEERTEAL AHLQDIEKKH
201: KELKNEMVQF ADNDPATLEA MRAAIEVAHQ SANRWTDNIF TLRQWCSNNF PQAKEQLEHL YTEAGITEDF DYLELSSFPL SSSSHDPETP KQLLVEDQA
101: KMGPKKGVIS QSVKDVIQSL VDDDLVAKDK IGISVYFWSL PSCAGNQLRS VRQKLESDLQ GSNKKLAELV DQCDALKKGR EDSEERTEAL AHLQDIEKKH
201: KELKNEMVQF ADNDPATLEA MRAAIEVAHQ SANRWTDNIF TLRQWCSNNF PQAKEQLEHL YTEAGITEDF DYLELSSFPL SSSSHDPETP KQLLVEDQA
001: MSKKRGLSLE EKREKMLQIF YESQDFFLLK ELEKMGPKKG VISQSVKDVI QSLVDDDLVA KDKIGISIYF WSLPSCAGNQ LRSVRQKLES DLQGSNKRLA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA
Arabidopsis Description
MND1Meiotic nuclear division protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.