Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93827 | Canola | cytosol | 94.03 | 94.03 |
| AT1G32530.1 | Thale cress | cytosol | 71.91 | 69.48 |
| CDX84219 | Canola | mitochondrion, nucleus | 53.13 | 61.66 |
| CDY31680 | Canola | mitochondrion, nucleus | 47.89 | 58.02 |
| KRH58212 | Soybean | nucleus | 57.06 | 54.67 |
| KRH04325 | Soybean | nucleus | 53.71 | 54.34 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 53.13 | 50.48 |
| KRH28281 | Soybean | nucleus, plastid | 45.71 | 46.38 |
| PGSC0003DMT400052886 | Potato | nucleus | 47.02 | 44.67 |
| Solyc08g006980.2.1 | Tomato | nucleus | 46.29 | 43.92 |
| GSMUA_Achr1P24020_001 | Banana | mitochondrion, nucleus | 41.05 | 41.96 |
| GSMUA_Achr7P04700_001 | Banana | mitochondrion, nucleus | 39.74 | 40.33 |
| Solyc08g077100.2.1 | Tomato | nucleus | 24.16 | 39.24 |
| Os09t0371700-01 | Rice | nucleus | 10.19 | 32.86 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 31.44 | 32.78 |
| TraesCS5B01G194700.1 | Wheat | mitochondrion | 31.3 | 32.63 |
| TraesCS5D01G202000.1 | Wheat | mitochondrion | 31.3 | 32.63 |
| KXG35515 | Sorghum | mitochondrion | 30.28 | 32.3 |
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 29.55 | 31.67 |
| HORVU5Hr1G058760.1 | Barley | plastid | 31.0 | 29.38 |
| OQU93157 | Sorghum | plastid | 9.17 | 28.77 |
| CDX91265 | Canola | cytosol, mitochondrion, nucleus | 10.33 | 27.1 |
| CDY22093 | Canola | nucleus | 16.74 | 26.02 |
| CDY21932 | Canola | nucleus, plastid | 24.6 | 20.56 |
| CDX89896 | Canola | nucleus | 22.71 | 18.62 |
| CDY18168 | Canola | nucleus | 9.46 | 12.57 |
Protein Annotations
| EnsemblPlants:CDY01268 | EnsemblPlantsGene:GSBRNA2T00111446001 | Gene3D:3.30.40.10 | GO:A0A078EP24 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF133 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:CDY01268 | ProteinID:CDY01268.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EF41FA | MapMan:35.1 | : | : | : | : |
Description
BnaC05g24640D
Coordinates
chrLK031925:+:892347..895274
Molecular Weight (calculated)
76760.9 Da
IEP (calculated)
5.841
GRAVY (calculated)
-0.602
Length
687 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCTVRDKHV RAARKIRPAY KPELELDLDR VALSKSIVES SLKNLVYHPG LTGSTSGSCC VHSGTSFEES VWGYCTEENL QEILLKHLEF LYDQAVSNLI
101: DLGCEESVAM RAVLSNGHCY GESDVLKNIV NNSLSYLNIS SNGDQSEAGF TDLRDLEEYS LDGMVYLLQQ VRPSFSKGDA MWCLLMSELH VGKASTMDLP
201: NRGTCCAKED SHGEGTLDLA GFMAPALCRF HGGWAFGNGG GPEFSGKGWF SMNNAELKLQ REIECPRRFN LSPTMKSLLK RNVAAFAAGF RASMKQKQKQ
301: IDDGTSGEGA DPTHVESEES VGSVLEKFRD LNLDDNLESV GEDGVIVTLL RQVKDLEKKL KERKEWAQKK AMQAAQKVSD ELTELKSLNS ERESIQMLKK
401: GKQAVDESTV KRLSELENAV RKATCQRDTA NAIVRTLENQ NAEIRAEREG LKLSASESMK ACMEESKKEK KCLKKHLAWQ KQKLKLQDEI TAEKEKIKAL
501: YKSLAQITQD EKEIEAKRVE EQKAKEQALA QVEEEQRSKE AAEAHNKRKL ETLRLKIELD FQRRKDDHQR LEQELSLLKA SSDTDSSHLS SNVWEPERSQ
601: GENIAKLLEE LDKLEGSYES EANNDRECII CMKDEVSVVF LPCAHQVVCG SCSDNFFSSN NGGGGKVTCP CCRAVVQQRI HIFGATS
101: DLGCEESVAM RAVLSNGHCY GESDVLKNIV NNSLSYLNIS SNGDQSEAGF TDLRDLEEYS LDGMVYLLQQ VRPSFSKGDA MWCLLMSELH VGKASTMDLP
201: NRGTCCAKED SHGEGTLDLA GFMAPALCRF HGGWAFGNGG GPEFSGKGWF SMNNAELKLQ REIECPRRFN LSPTMKSLLK RNVAAFAAGF RASMKQKQKQ
301: IDDGTSGEGA DPTHVESEES VGSVLEKFRD LNLDDNLESV GEDGVIVTLL RQVKDLEKKL KERKEWAQKK AMQAAQKVSD ELTELKSLNS ERESIQMLKK
401: GKQAVDESTV KRLSELENAV RKATCQRDTA NAIVRTLENQ NAEIRAEREG LKLSASESMK ACMEESKKEK KCLKKHLAWQ KQKLKLQDEI TAEKEKIKAL
501: YKSLAQITQD EKEIEAKRVE EQKAKEQALA QVEEEQRSKE AAEAHNKRKL ETLRLKIELD FQRRKDDHQR LEQELSLLKA SSDTDSSHLS SNVWEPERSQ
601: GENIAKLLEE LDKLEGSYES EANNDRECII CMKDEVSVVF LPCAHQVVCG SCSDNFFSSN NGGGGKVTCP CCRAVVQQRI HIFGATS
001: MGCTVREKHV KPTRRIKAAA FRSDPPLCWV EKIAMSQSIV ENLVYHPGLT DSGSVNLNSV TENPEENFWA YCTEEHLEEI LLKHLEFLYN QAVSKLLELG
101: YEERVALKAV LSNGHCYGEL DVLTNIVNNS LSYLNSGGGG GGSNGNGEDR TETGFTDLRD LEEYSLAGMI YLLQQVKPNL SKGDAMWCLL MSELHVGRAS
201: TLDVPTNRSS CCTKEDSNVE DVGTGGTLDI AGFMAPALCR FHGGWGFGNG GGPEFSGNGF SMKGAELKLQ REIDCPKRFN LSPSMKSLLK RNVAAFAAGY
301: RASMKQKQIQ SSDTIGDSKA CNDPAIVKSC GQQPRKSGSE ESVSTVLEKF RDLNLDDNLE SVGVDDKDCV IVDLLHQVKD FEKKVKERKE WAQKNAMQAA
401: QKVSEELAEL KTLSSEREGI QLLKKGKQAV EESTAKRFTD KEIELRKACS QNDRANVIVR KLENQNAEIR AEREGSKLSA SESLKACMEA SKKEKKCLKK
501: LVAWEKQILK LQDEITAEKE KIKALYKTLA QITEYEKEIE AKWRQEQKAK EEALAQMEEE QRSKEAAEGH NKRKLETLRL KIELDFQRHK DDHQRLEQEL
601: GRLKASSDSD SSHISNNAWK PKKSQGENIA KLLEEIDKLE GSYDNEANYD RECIICMKDE VSVVFLPCAH QVVCGSCSDS FFASNNGGSK VTCPCCRGLV
701: QQRIRIFGAT S
101: YEERVALKAV LSNGHCYGEL DVLTNIVNNS LSYLNSGGGG GGSNGNGEDR TETGFTDLRD LEEYSLAGMI YLLQQVKPNL SKGDAMWCLL MSELHVGRAS
201: TLDVPTNRSS CCTKEDSNVE DVGTGGTLDI AGFMAPALCR FHGGWGFGNG GGPEFSGNGF SMKGAELKLQ REIDCPKRFN LSPSMKSLLK RNVAAFAAGY
301: RASMKQKQIQ SSDTIGDSKA CNDPAIVKSC GQQPRKSGSE ESVSTVLEKF RDLNLDDNLE SVGVDDKDCV IVDLLHQVKD FEKKVKERKE WAQKNAMQAA
401: QKVSEELAEL KTLSSEREGI QLLKKGKQAV EESTAKRFTD KEIELRKACS QNDRANVIVR KLENQNAEIR AEREGSKLSA SESLKACMEA SKKEKKCLKK
501: LVAWEKQILK LQDEITAEKE KIKALYKTLA QITEYEKEIE AKWRQEQKAK EEALAQMEEE QRSKEAAEGH NKRKLETLRL KIELDFQRHK DDHQRLEQEL
601: GRLKASSDSD SSHISNNAWK PKKSQGENIA KLLEEIDKLE GSYDNEANYD RECIICMKDE VSVVFLPCAH QVVCGSCSDS FFASNNGGSK VTCPCCRGLV
701: QQRIRIFGAT S
Arabidopsis Description
MIP1MND1-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX22]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.