Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P04700_001 | Banana | mitochondrion, nucleus | 66.82 | 66.32 |
| Bra005352.1-P | Field mustard | nucleus | 24.11 | 52.6 |
| KRH04325 | Soybean | nucleus | 48.36 | 47.86 |
| CDX84219 | Canola | mitochondrion, nucleus | 42.11 | 47.8 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 50.74 | 47.16 |
| KRH58212 | Soybean | nucleus | 49.26 | 46.16 |
| CDY31680 | Canola | mitochondrion, nucleus | 38.54 | 45.68 |
| Os09t0371700-01 | Rice | nucleus | 13.84 | 43.66 |
| KXG35515 | Sorghum | mitochondrion | 40.62 | 42.39 |
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 39.88 | 41.81 |
| KRH28281 | Soybean | nucleus, plastid | 42.11 | 41.8 |
| CDX93827 | Canola | cytosol | 42.41 | 41.48 |
| Bra023274.1-P | Field mustard | nucleus | 42.26 | 41.34 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 40.48 | 41.27 |
| AT1G32530.1 | Thale cress | cytosol | 43.6 | 41.21 |
| TraesCS5D01G202000.1 | Wheat | mitochondrion | 40.33 | 41.12 |
| CDY01268 | Canola | cytosol | 41.96 | 41.05 |
| TraesCS5B01G194700.1 | Wheat | mitochondrion | 40.18 | 40.97 |
| AT2G35330.1 | Thale cress | endoplasmic reticulum | 44.49 | 40.51 |
| PGSC0003DMT400052886 | Potato | nucleus | 43.01 | 39.97 |
| Solyc08g077100.2.1 | Tomato | nucleus | 24.4 | 38.77 |
| Solyc08g006980.2.1 | Tomato | nucleus | 41.67 | 38.67 |
| HORVU5Hr1G058760.1 | Barley | plastid | 40.18 | 37.24 |
| OQU93157 | Sorghum | plastid | 10.71 | 32.88 |
| GSMUA_Achr3P23730_001 | Banana | nucleus | 30.21 | 28.12 |
| GSMUA_Achr3P09160_001 | Banana | nucleus | 27.38 | 25.07 |
| GSMUA_Achr2P01510_001 | Banana | nucleus | 29.91 | 24.91 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P24020_001 | EnsemblPlants:GSMUA_Achr1T24020_001 | EnsemblPlantsGene:GSMUA_Achr1G24020_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF133 | PFAM:PF13920 |
| PFscan:PS50089 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000294D87D | UniProt:M0S2K9 | MapMan:35.1 |
Description
Putative MND1-interacting protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G24020_001]
Coordinates
chr1:+:18442016..18447433
Molecular Weight (calculated)
74363.5 Da
IEP (calculated)
7.824
GRAVY (calculated)
-0.618
Length
672 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNGRDKSL RGGRRARRAA KHPLESAPPE APCAPAAAPS FPVHPAASAA DPDPGLAGSN SSPIPAPAGY DDAGWGYCTE EQLEEILLKN LDFIYKEALS
101: RLVSLGYDEE TALRAILCSG HCYGSMDVLS NILHNALAHL KSPLPQSAAV RAEAPQQDSS AVPGNGFTDL RHLQEYSLAG MVCLLQQVRP TLTRGGAMWC
201: LLMSELHFTQ TASLCKFHDA AATAAATTGV SDVADPRCYD LLHSLKSTLR QNACTFPPGS GFRPFIKPSP QPETSDLATG QQQPKEVNAV ASAARVENDS
301: PDIGVVDSVL KALESMSLDD NGTEDPKKEM ILDVIRQIRE LESQVKERKE WAQQKALQAA RKLSNDLTEL RLLRMEREEN QRLKKGKQAL EDTTMKRLTE
401: MENALKKVSG QVDRANAVVR RLETENAEIR AEIEASKLSA SESSRTCTEV TRREKKCLKK LVAWEKQREK MQEEIAEEKK KIRLMQQELD EVKAATKEYE
501: MKWKQEIKAK EEAIALAEEE RRLKEAAKVN ANRRHEALRR KREIDFQRLK DDVQRLDEEL ARLKASAGSN SLIAPSANAS RTADAADIKN LKEPNMKALT
601: GLKKQQESSN KLNRSRACII CKKDEVSVVF LPCSHQVVCG SCNEEHEKEG KSSCPCCSVR IEERIRVYGA SS
101: RLVSLGYDEE TALRAILCSG HCYGSMDVLS NILHNALAHL KSPLPQSAAV RAEAPQQDSS AVPGNGFTDL RHLQEYSLAG MVCLLQQVRP TLTRGGAMWC
201: LLMSELHFTQ TASLCKFHDA AATAAATTGV SDVADPRCYD LLHSLKSTLR QNACTFPPGS GFRPFIKPSP QPETSDLATG QQQPKEVNAV ASAARVENDS
301: PDIGVVDSVL KALESMSLDD NGTEDPKKEM ILDVIRQIRE LESQVKERKE WAQQKALQAA RKLSNDLTEL RLLRMEREEN QRLKKGKQAL EDTTMKRLTE
401: MENALKKVSG QVDRANAVVR RLETENAEIR AEIEASKLSA SESSRTCTEV TRREKKCLKK LVAWEKQREK MQEEIAEEKK KIRLMQQELD EVKAATKEYE
501: MKWKQEIKAK EEAIALAEEE RRLKEAAKVN ANRRHEALRR KREIDFQRLK DDVQRLDEEL ARLKASAGSN SLIAPSANAS RTADAADIKN LKEPNMKALT
601: GLKKQQESSN KLNRSRACII CKKDEVSVVF LPCSHQVVCG SCNEEHEKEG KSSCPCCSVR IEERIRVYGA SS
001: MGCTVREKHV RPNRKTRSVK PEFDPCCLLD RTALSKSIVE SSLKHLVYHP GLLDSCPESN PSGSFEDNNG WGYCTEEQLE DILLKHLEYL YNEAISKLVG
101: SGYDEDVALR AVLSNGYCYG GMDVMTNILH NSLAYLKSNT GEGSNVNNED QSETVFTDLR QLEEYSLAGM VYLLQQVKPN LSKGDAMWCL LMSELHVGRA
201: STMDIPSSGK GDSSNVGVGG ASSTVNGVGG AIAPALCRFH GGWGFGNGKG PKFSGNGFSL HSEELTLQRE IDCPRRFNLS PSMKSLLREN VAAFAAGYRA
301: SMEQKKQVQM QSETSGTSLS CTAAATHSEK CEQPHVFGSE ECFSSVLEKF RDLNLDDNVD SAPEELKDDA LIGLLQQVQD LKKQLKERKD WAQKKAMQAA
401: QKVSDELSEL KSLRSEREEI QRVKKGKQTR EDSTLKKLSE MENALRKASG QVDKANAVVR ALENESAEIR AEMEASKLSA SESLTACMEA SKKEKKCLKK
501: LLAWEKQKMK LQDEITAEKE KIKALNRALA QITQEEKEYE AKWRQEQKAK EQVLAQVEEE QRSKEAIEAS NKRKVESLRL KIEIDFQRHK DDLQRLEQEL
601: SRLNKASSTD SSLQSNNTSH TKVKSDKSKG ETMSKLLEEL NRLDGSYEKE ANYDRECLIC MKDEVSVVFL PCAHQVVCAS CSDSFMGSGK ATCPCCRAPV
701: QQRIRVFGAS S
101: SGYDEDVALR AVLSNGYCYG GMDVMTNILH NSLAYLKSNT GEGSNVNNED QSETVFTDLR QLEEYSLAGM VYLLQQVKPN LSKGDAMWCL LMSELHVGRA
201: STMDIPSSGK GDSSNVGVGG ASSTVNGVGG AIAPALCRFH GGWGFGNGKG PKFSGNGFSL HSEELTLQRE IDCPRRFNLS PSMKSLLREN VAAFAAGYRA
301: SMEQKKQVQM QSETSGTSLS CTAAATHSEK CEQPHVFGSE ECFSSVLEKF RDLNLDDNVD SAPEELKDDA LIGLLQQVQD LKKQLKERKD WAQKKAMQAA
401: QKVSDELSEL KSLRSEREEI QRVKKGKQTR EDSTLKKLSE MENALRKASG QVDKANAVVR ALENESAEIR AEMEASKLSA SESLTACMEA SKKEKKCLKK
501: LLAWEKQKMK LQDEITAEKE KIKALNRALA QITQEEKEYE AKWRQEQKAK EQVLAQVEEE QRSKEAIEAS NKRKVESLRL KIEIDFQRHK DDLQRLEQEL
601: SRLNKASSTD SSLQSNNTSH TKVKSDKSKG ETMSKLLEEL NRLDGSYEKE ANYDRECLIC MKDEVSVVFL PCAHQVVCAS CSDSFMGSGK ATCPCCRAPV
701: QQRIRVFGAS S
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.