Factsheet for GSMUA_Achr2P01510_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P23730_001	Banana	nucleus	60.35	67.45
Solyc10g050590.1.1	Tomato	cytosol	2.85	45.1
Solyc09g074160.1.1	Tomato	cytosol	3.35	45.0
GSMUA_Achr3P09160_001	Banana	nucleus	40.27	44.28
VIT_05s0020g02320.t01	Wine grape	nucleus	46.84	42.47
KRH11313	Soybean	nucleus, plastid	46.34	42.26
KRH20958	Soybean	nucleus, plastid	46.22	42.24
Solyc01g080430.2.1	Tomato	nucleus	43.99	41.42
PGSC0003DMT400081760	Potato	plastid	46.22	41.4
KRH02160	Soybean	nucleus	44.73	41.16
Bra033393.1-P	Field mustard	nucleus	13.51	40.52
KRH50955	Soybean	nucleus	44.24	40.11
CDX91265	Canola	cytosol, mitochondrion, nucleus	12.76	39.31
PGSC0003DMT400009741	Potato	nucleus	5.45	38.6
CDY22093	Canola	nucleus	19.95	36.43
Solyc08g016350.1.1	Tomato	extracellular	3.22	36.11
EER99333	Sorghum	nucleus, plastid	37.3	35.5
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	5.2	35.0
Os05t0141500-01	Rice	nucleus, plastid	37.05	34.45
Zm00001d006317_P002	Maize	plastid	36.43	34.35
TraesCS1A01G084200.1	Wheat	cytosol	36.68	34.06
TraesCS1B01G101700.1	Wheat	cytosol	36.68	34.02
HORVU1Hr1G018310.1	Barley	cytosol	36.68	33.98
TraesCS1D01G085400.1	Wheat	cytosol	36.31	33.68
Bra036227.1-P	Field mustard	plastid	29.24	33.43
Solyc10g050610.1.1	Tomato	nucleus	12.14	30.82
AT4G03000.2	Thale cress	nucleus	30.86	30.59
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	24.91	29.91
Solyc06g008900.2.1	Tomato	nucleus	31.1	29.81
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	24.91	29.69
Solyc09g074140.1.1	Tomato	nucleus	19.7	29.17
CDX89896	Canola	nucleus	28.87	27.8
CDY21932	Canola	nucleus, plastid	28.25	27.74
AT1G03365.2	Thale cress	nucleus	27.76	27.22
PGSC0003DMT400009742	Potato	nucleus	27.14	27.04
Solyc09g074190.1.1	Tomato	nucleus	26.64	26.77
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	27.63	26.74
PGSC0003DMT400074463	Potato	cytosol	14.37	26.48
Zm00001d021404_P001	Maize	cytosol	36.68	26.17
Solyc09g074150.1.1	Tomato	nucleus	13.14	26.04
Solyc09g074200.1.1	Tomato	nucleus	25.53	25.53
Solyc09g074120.1.1	Tomato	nucleus	15.99	23.63
CDY18168	Canola	nucleus	14.5	22.63
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	19.08	22.13
Solyc09g074170.1.1	Tomato	cytosol	8.18	20.62

Protein Annotations

EnsemblPlants:GSMUA_Achr2P01510_001	EnsemblPlants:GSMUA_Achr2T01510_001	EnsemblPlantsGene:GSMUA_Achr2G01510_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	PFAM:PF13920
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI000295749D	UniProt:M0S492	MapMan:35.1

Description

Putative E3 ubiquitin-protein ligase RF298 [Source:GMGC_GENE;Acc:GSMUA_Achr2G01510_001]

Coordinates

chr2:+:7309902..7314372

Molecular Weight (calculated)

90924.4 Da

IEP (calculated)

5.877

GRAVY (calculated)

-0.546

Length

807 amino acids

Sequence
(BLAST)

001: MATVLTSASS PLNSSIPIQE ASSRNKRKFR ADPPLADPNT VADALHMELP DYELFPTEKK GLELDEFQDV DWSCLTESQL EEILLSNLDM VFRTAIKMIT
101: SHGYTEEIAT NAVLSSGLCY GYKDTVSNVV DNALVFLRSG QEVDSSRREN VAEDLKKLEK SVLADMISVL RDVSPFFSTG DAMWHLLMFD ANVSHACAMD
201: SNLLNTVIYD EYLGTSTGSQ LESGLPCGRF SASNEDGMGP KPKPVKESLI SSYNHAQESS IVVSRSSQEE KPVGSRKVHV GSSKREFVLR QKSVHFEKSY
301: RSLGSKAASR ACKQSGLTDA NLNLSFSDGH SSSPSCIAKE ISSQLPASST NTELSLSLPS ESNAGVSLKQ EPNVNAANYS NNSPIHSDIM CRDWVPEDKK
401: DEKLLVLVPL MHELQAQLQD WTDWAQQKVM QAARRLSKEK AELQTLRQEK EEVARLEKER QTLEENTRKK LAEMELAISK ASAQVERANA AAHRLEFENT
501: QLRLGMEAAK LRAAESAANC QEVSRREMKT VKMFQSWEKQ QVLFQEELAT EKHQLSQLQQ QLEQVKKLRD QSEARWRQEE KLKDDTLTEA NAERKEREQL
601: ETSAKSQENA LKLEAENVLQ RCKNDIRRLE QQIAQLRLVT HSSNIATLRW GTDKSYASRL SDGKRSNDSY VLAKIMDTQD LASEDLQRER ECVMCLSEEM
701: SVVFLPCAHQ VVCTKCNELH EKKGMKDCPS CRTPIQRRVS VCSTDYQLEH LTIVFLFLFF IHESGRLWVL VNLHGTSALV FSHQKFIERF YGEACYGSDD
801: LSGANRV

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.