CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91265	Canola	cytosol, mitochondrion, nucleus	46.15	77.86
Bra036227.1-P	Field mustard	plastid	93.89	58.78
Solyc09g074160.1.1	Tomato	cytosol	7.47	55.0
Solyc10g050590.1.1	Tomato	cytosol	6.33	54.9
CDY21932	Canola	nucleus, plastid	89.82	48.3
PGSC0003DMT400009741	Potato	nucleus	11.31	43.86
Solyc08g016350.1.1	Tomato	extracellular	7.01	43.06
AT4G03000.2	Thale cress	nucleus	69.91	37.96
CDX89896	Canola	nucleus	58.6	30.91
Solyc09g074140.1.1	Tomato	nucleus	34.16	27.71
Solyc09g074120.1.1	Tomato	nucleus	32.81	26.56
Solyc09g074150.1.1	Tomato	nucleus	21.49	23.34
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	43.67	23.14
GSMUA_Achr3P23730_001	Banana	nucleus	35.97	22.02
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	34.16	21.7
GSMUA_Achr3P09160_001	Banana	nucleus	35.29	21.25
Solyc06g008900.2.1	Tomato	nucleus	40.05	21.02
GSMUA_Achr2P01510_001	Banana	nucleus	36.43	19.95
Solyc10g050610.1.1	Tomato	nucleus	14.25	19.81
CDY31680	Canola	mitochondrion, nucleus	24.89	19.4
PGSC0003DMT400009742	Potato	nucleus	34.39	18.77
CDX84219	Canola	mitochondrion, nucleus	25.11	18.75
EER99333	Sorghum	nucleus, plastid	35.97	18.75
Solyc09g074190.1.1	Tomato	nucleus	33.94	18.68
Solyc09g074200.1.1	Tomato	nucleus	33.71	18.46
Zm00001d006317_P002	Maize	plastid	35.07	18.11
TraesCS1A01G084200.1	Wheat	cytosol	35.29	17.95
TraesCS1B01G101700.1	Wheat	cytosol	35.29	17.93
Os05t0141500-01	Rice	nucleus, plastid	35.07	17.86
TraesCS1D01G085400.1	Wheat	cytosol	35.07	17.82
HORVU1Hr1G018310.1	Barley	cytosol	34.84	17.68
CDY01268	Canola	cytosol	26.02	16.74
CDX93827	Canola	cytosol	26.02	16.74
PGSC0003DMT400074463	Potato	cytosol	16.29	16.44
OQU88874	Sorghum	nucleus	25.11	14.05
Zm00001d021404_P001	Maize	cytosol	35.07	13.7
CDY18168	Canola	nucleus	15.84	13.54
Zm00001d005154_P001	Maize	nucleus	23.3	13.09
Solyc09g074170.1.1	Tomato	cytosol	9.05	12.5
Os05t0141400-01	Rice	plastid	4.75	9.38
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	2.26	8.33

Protein Annotations

EnsemblPlants:CDY22093	EnsemblPlantsGene:GSBRNA2T00018479001	Gene3D:3.30.40.10	GO:A0A078GBQ2	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	PFAM:PF13920
PFscan:PS50089	ProteinID:CDY22093	ProteinID:CDY22093.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0004EE7246
UniProt:A0A078GBQ2	MapMan:35.1	:	:	:	:

Description

BnaA09g01220DBnaA09g01220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBQ2]

Coordinates

chrLK032127:+:535090..536977

Molecular Weight (calculated)

50364.4 Da

IEP (calculated)

9.859

GRAVY (calculated)

-0.852

Length

442 amino acids

Sequence
(BLAST)

001: MRQKSCVDKI RTYSKGSGGY KTAKYASVGG FLVEKRGKSP SKIASETVKD PPALDGSGYV TAIPAVNAPP ALLPSGSEPA LDYYTGIPYD ASLGIYIPRN
101: KRDELVLKLA PRMKDLETEL QVWTDWANQK VKQATSRLLK DQPELKALRK EKEEAEEVRK ERQLLEESNT KRRSEMEFAL SNMTRQLEKA NNAVRRLEME
201: QSILRKEREA ANLRAAEAAV NYKEAKERVQ RTLKSSQSWE GQKVLLQEEV KSQRDKVAEL QQEVAKAKNR QNQIEATWKQ EKAAKEKLAA QATALKEERV
301: KLEELGKAEE ERIKTKAEND VRYYTENIKR LESEISKLKL KSDCLKIAAL KKGIDGSNEM TRTTTTKASL IWENNHRTEG KIKRERECVM CLSEEMSVIF
401: LPCAHQVLCS KCNQLHEKEA MDDCPSCRAK IQRRIQARFA RG

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.