Factsheet for TraesCS1D01G085400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G101700.1	Wheat	cytosol	98.39	98.39
TraesCS1A01G084200.1	Wheat	cytosol	96.67	96.78
HORVU1Hr1G018310.1	Barley	cytosol	95.63	95.52
EER99333	Sorghum	nucleus, plastid	74.71	76.65
Os05t0141500-01	Rice	nucleus, plastid	72.87	73.04
Zm00001d006317_P002	Maize	plastid	71.38	72.55
Zm00001d021404_P001	Maize	cytosol	73.56	56.59
Solyc10g050590.1.1	Tomato	cytosol	2.41	41.18
GSMUA_Achr3P23730_001	Banana	nucleus	33.22	40.03
Solyc09g074160.1.1	Tomato	cytosol	2.76	40.0
Bra033393.1-P	Field mustard	nucleus	12.3	39.78
PGSC0003DMT400009741	Potato	nucleus	5.17	39.47
GSMUA_Achr2P01510_001	Banana	nucleus	33.68	36.31
CDX91265	Canola	cytosol, mitochondrion, nucleus	10.8	35.88
CDY22093	Canola	nucleus	17.82	35.07
VIT_05s0020g02320.t01	Wine grape	nucleus	34.25	33.48
PGSC0003DMT400081760	Potato	plastid	33.79	32.63
Solyc01g080430.2.1	Tomato	nucleus	32.07	32.56
KRH02160	Soybean	nucleus	32.3	32.04
KRH11313	Soybean	nucleus, plastid	32.07	31.53
KRH20958	Soybean	nucleus, plastid	31.95	31.48
KRH50955	Soybean	nucleus	32.18	31.46
Solyc08g016350.1.1	Tomato	extracellular	2.53	30.56
Bra036227.1-P	Field mustard	plastid	23.68	29.18
Solyc09g074140.1.1	Tomato	nucleus	16.67	26.61
AT4G03000.2	Thale cress	nucleus	24.48	26.17
CDX89896	Canola	nucleus	24.83	25.78
AT1G03365.2	Thale cress	nucleus	24.37	25.76
CDY21932	Canola	nucleus, plastid	24.25	25.67
Solyc10g050610.1.1	Tomato	nucleus	9.2	25.16
Solyc06g008900.2.1	Tomato	nucleus	23.45	24.23
TraesCS5D01G202000.1	Wheat	mitochondrion	18.16	23.98
PGSC0003DMT400009742	Potato	nucleus	22.18	23.83
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	22.07	23.02
Solyc09g074200.1.1	Tomato	nucleus	21.26	22.92
Solyc09g074120.1.1	Tomato	nucleus	14.37	22.89
PGSC0003DMT400074463	Potato	cytosol	11.49	22.83
Solyc09g074150.1.1	Tomato	nucleus	10.34	22.11
Solyc09g074190.1.1	Tomato	nucleus	20.23	21.92
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	17.36	21.7
CDY18168	Canola	nucleus	11.84	19.92
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	2.64	19.17
Solyc09g074170.1.1	Tomato	cytosol	5.98	16.25

Protein Annotations

EnsemblPlants:TraesCS1D01G085400.1	EnsemblPlantsGene:TraesCS1D01G085400	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF143	PFAM:PF13920	PFscan:PS50089
SEG:seg	SUPFAM:SSF57850	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1D:-:69785748..69789773

Molecular Weight (calculated)

95344.8 Da

IEP (calculated)

6.613

GRAVY (calculated)

-0.524

Length

870 amino acids

Sequence
(BLAST)

001: MSSVATQEAA LGSTLQEKAA SRNKRKFRAE PPSGELAPFG LEYPLTTDCV GFEFMSPEKA AMAAAAAAAE GANLDFIPST CDACKGIHAT AEELLECQRY
101: VNWSDPNETQ LEEILLKSLD TTFDNAVSVI TTMGYSEAAA RAAVVRAAAQ YSWRESLAGF SEAAVEVLKS EGDMLPRDGS SLEDMRKIEQ VVLASLVAVV
201: NEAQPFYTTG DVMFCLLMSD MNVAHACAMD YSAAPLPAVG AQVIAQPVVG NYEPTPTSDL SVSITNPQTG VTFRGKLTPV PPGTYNAVKA DSSTTPVNPN
301: VPSGKPCVSG KMHPVAPNVK PKEHPAATPD HSEDQPFVAA ATQSVKDDKP FPSKRGGSKR DSLHRQKLMS FDKNSRALGS KGSLRSGKYI SCGTVALERK
401: CRQVSDSATC SLKGASKIAK GFAASMKGSE YSVDLSFTAT GTIASIPSFD AKAPNNTDPA SAASTELSLS LPLPLPLPSS SDGSAPSLNH DSSAEVVDPS
501: SKINFAYDED QKVWIPQDKK DEMVLILVQR QKELQAHMRD WTDWAMEKVM QVTRRLAKEK EELQSLRKEK EEASRLHDER HCLEESTRKK LLEMESAISR
601: ANNQLDKADA SARRREAENA QLRMQMEAAK RHAAESVANF VELSKKDESS LKRSQHWESE RAMLQEQLAS EKSKLTRVQQ QLQHAKEKKE QLKVRWRQEE
701: ARKTEAIACV SSERKERGQI ETSLRSEENF LHLKAENDMQ RYKSEIRALE QQISQLKVSL DASEAAAPKW GTDDKTRPLR LSEGRKNGGN AQVLAKMAGA
801: VALDLDFDDI QRDRECVMCL SEEMSVVFLP CAHQVVCAKC NDLHDKQGMK ECPSCRTLIQ RRVCARTAGC

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.