Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g080430.2.1 | Tomato | nucleus | 87.35 | 91.83 |
| VIT_05s0020g02320.t01 | Wine grape | nucleus | 60.49 | 61.24 |
| KRH20958 | Soybean | nucleus, plastid | 54.49 | 55.61 |
| KRH02160 | Soybean | nucleus | 54.05 | 55.53 |
| KRH11313 | Soybean | nucleus, plastid | 54.49 | 55.48 |
| KRH50955 | Soybean | nucleus | 53.39 | 54.04 |
| GSMUA_Achr2P01510_001 | Banana | nucleus | 41.4 | 46.22 |
| GSMUA_Achr3P23730_001 | Banana | nucleus | 36.52 | 45.57 |
| PGSC0003DMT400009741 | Potato | nucleus | 5.33 | 42.11 |
| GSMUA_Achr3P09160_001 | Banana | nucleus | 34.18 | 41.96 |
| TraesCS1A01G084200.1 | Wheat | cytosol | 32.85 | 34.06 |
| TraesCS1B01G101700.1 | Wheat | cytosol | 32.85 | 34.02 |
| Os05t0141500-01 | Rice | nucleus, plastid | 32.63 | 33.87 |
| EER99333 | Sorghum | nucleus, plastid | 31.85 | 33.84 |
| TraesCS1D01G085400.1 | Wheat | cytosol | 32.63 | 33.79 |
| HORVU1Hr1G018310.1 | Barley | cytosol | 32.52 | 33.64 |
| Zm00001d006317_P002 | Maize | plastid | 30.85 | 32.48 |
| PGSC0003DMT400074463 | Potato | cytosol | 14.76 | 30.37 |
| PGSC0003DMT400052886 | Potato | nucleus | 23.75 | 29.6 |
| PGSC0003DMT400009742 | Potato | nucleus | 26.19 | 29.14 |
| Zm00001d021404_P001 | Maize | cytosol | 31.74 | 25.29 |
| OQU88874 | Sorghum | nucleus | 20.64 | 23.54 |
| Zm00001d005154_P001 | Maize | nucleus | 19.09 | 21.86 |
| Os05t0141400-01 | Rice | plastid | 3.55 | 14.29 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400081760 | EnsemblPlantsGene:PGSC0003DMG400032108 | EntrezGene:102594650 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF141 | PFAM:PF13920 |
| PFscan:PS50089 | PGSC:PGSC0003DMG400032108 | RefSeq:XP_006365281.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000296E10B |
| UniProt:M1D510 | MapMan:35.1 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032108]
Coordinates
chr1:-:60918994..60924835
Molecular Weight (calculated)
100351.0 Da
IEP (calculated)
6.567
GRAVY (calculated)
-0.489
Length
901 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMVAKACA TPSAQYTPAV TVLEKGSRNK RKFRADPPLV DPNKMIPSPQ FECTSFEFSA DKFGMIPTHE LSNGCDMCSL KQDSSESLKL DLGLSCSVGS
101: SEVGPSEPRE VVETTEQFHD ADWSDFTEAQ LEELVLSNLD TIFRSAIKRI MAFGYSEEIA TKAVLRSGIC YGCKDIVSNI VENTLVFLRS GHDIDSSGEH
201: YFEDLLQMEK YVLAELVCVL REVRPFFSTG DAMWCLLICD MNVSHACAME SDPLSSLVGD GSENSSASVQ PNLQSEVKSS ESITRIPCKP NPLVACAHCS
301: SETSNVASAI SGHSFQLEAS NMPGVHEIKP KPSFALTGII PEKDSSSSLF DTVDKTFTAT GAPNPPTVEE EFVGTRKVSG ITKREYILRQ KSLHLEKHYR
401: TYSSKGVSRK FNSFSGLVLD NKLKSMADSA GMNIKNASLK VNKISVAGRK DNVHHSISTN NGFSSTSVFG SNNGNGLVPL PNTNIPSSSP QVSTSPALPA
501: ADTELSLSFP ASNMTPMPLS YNAGAGVCAF NMIPNEKSIA QWVPQDKKDE MILKLVPRVR ELQGQLQEWT EWANQKVMQA ARRLSKDKAE LKTLRQEKEE
601: VERLKKEKQS LEENTMKKLA EMENALFKAK GQFERANAAV RRLEIEKDLL KRDMEAAKLR AAELAASCQE VSKREKKTLV KFQSWEKQKA ILQDELAAER
701: RKLVELQQQL EQAKDVLNQL EGRWKQEMKA TEDLLRQASS LRKEREEIET SAKSKEDMTK LKAESSLQKY KDDIERLEKE ISQLRLKTDS SKIAALKRGI
801: DGSYASKLTD FRNAQLPKDT EIPYISTFVT DFEEYSQDGG VKRERECVMC LSEEMSVVFL PCAHQVVCTT CNELHEKQGM KECPSCRSLI QQRICARYSH
901: T
101: SEVGPSEPRE VVETTEQFHD ADWSDFTEAQ LEELVLSNLD TIFRSAIKRI MAFGYSEEIA TKAVLRSGIC YGCKDIVSNI VENTLVFLRS GHDIDSSGEH
201: YFEDLLQMEK YVLAELVCVL REVRPFFSTG DAMWCLLICD MNVSHACAME SDPLSSLVGD GSENSSASVQ PNLQSEVKSS ESITRIPCKP NPLVACAHCS
301: SETSNVASAI SGHSFQLEAS NMPGVHEIKP KPSFALTGII PEKDSSSSLF DTVDKTFTAT GAPNPPTVEE EFVGTRKVSG ITKREYILRQ KSLHLEKHYR
401: TYSSKGVSRK FNSFSGLVLD NKLKSMADSA GMNIKNASLK VNKISVAGRK DNVHHSISTN NGFSSTSVFG SNNGNGLVPL PNTNIPSSSP QVSTSPALPA
501: ADTELSLSFP ASNMTPMPLS YNAGAGVCAF NMIPNEKSIA QWVPQDKKDE MILKLVPRVR ELQGQLQEWT EWANQKVMQA ARRLSKDKAE LKTLRQEKEE
601: VERLKKEKQS LEENTMKKLA EMENALFKAK GQFERANAAV RRLEIEKDLL KRDMEAAKLR AAELAASCQE VSKREKKTLV KFQSWEKQKA ILQDELAAER
701: RKLVELQQQL EQAKDVLNQL EGRWKQEMKA TEDLLRQASS LRKEREEIET SAKSKEDMTK LKAESSLQKY KDDIERLEKE ISQLRLKTDS SKIAALKRGI
801: DGSYASKLTD FRNAQLPKDT EIPYISTFVT DFEEYSQDGG VKRERECVMC LSEEMSVVFL PCAHQVVCTT CNELHEKQGM KECPSCRSLI QQRICARYSH
901: T
001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG
Arabidopsis Description
RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.