Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH50955 | Soybean | nucleus | 85.52 | 84.27 |
| KRH11313 | Soybean | nucleus, plastid | 68.19 | 67.57 |
| KRH20958 | Soybean | nucleus, plastid | 67.62 | 67.16 |
| VIT_05s0020g02320.t01 | Wine grape | nucleus | 62.37 | 61.46 |
| PGSC0003DMT400081760 | Potato | plastid | 55.53 | 54.05 |
| Solyc01g080430.2.1 | Tomato | nucleus | 52.68 | 53.91 |
| GSMUA_Achr3P23730_001 | Banana | nucleus | 38.08 | 46.26 |
| GSMUA_Achr2P01510_001 | Banana | nucleus | 41.16 | 44.73 |
| GSMUA_Achr3P09160_001 | Banana | nucleus | 35.12 | 41.96 |
| EER99333 | Sorghum | nucleus, plastid | 31.93 | 33.02 |
| HORVU1Hr1G018310.1 | Barley | cytosol | 32.61 | 32.84 |
| TraesCS1B01G101700.1 | Wheat | cytosol | 32.38 | 32.64 |
| TraesCS1A01G084200.1 | Wheat | cytosol | 32.27 | 32.57 |
| KRH04325 | Soybean | nucleus | 25.2 | 32.55 |
| Zm00001d006317_P002 | Maize | plastid | 31.7 | 32.48 |
| TraesCS1D01G085400.1 | Wheat | cytosol | 32.04 | 32.3 |
| KRH71485 | Soybean | cytosol, endoplasmic reticulum, nucleus | 30.22 | 31.77 |
| KRH58212 | Soybean | nucleus | 25.54 | 31.24 |
| Os05t0141500-01 | Rice | nucleus, plastid | 30.22 | 30.53 |
| KRH28281 | Soybean | nucleus, plastid | 22.69 | 29.39 |
| Zm00001d021404_P001 | Maize | cytosol | 32.61 | 25.29 |
| OQU88874 | Sorghum | nucleus | 20.41 | 22.66 |
| Zm00001d005154_P001 | Maize | nucleus | 19.95 | 22.24 |
| Os05t0141400-01 | Rice | plastid | 3.99 | 15.62 |
Protein Annotations
| EntrezGene:100785921 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02010298 | ncoils:Coil | EnsemblPlantsGene:GLYMA_17G020500 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009966 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | UniProt:I1MRB7 |
| InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlants:KRH02160 | ProteinID:KRH02160 | ProteinID:KRH02160.1 | PFAM:PF13920 |
| PFscan:PS50089 | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF141 | SUPFAM:SSF57850 | UniParc:UPI000233F0AF | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr17:+:1519182..1524102
Molecular Weight (calculated)
97373.6 Da
IEP (calculated)
7.200
GRAVY (calculated)
-0.535
Length
877 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPSVSSQEK GSRNKRKFRA DPPLGEPNKF IPAPQLECLS YEFSAEKFEI TPGHRQVAAC DLCGLSQDHS DGLKLGLGLY SPGTSEVGPS QSKDKPETDE
101: INDADWSDLT EAQLEELVLT NLDIILKSAI KKIVACGYTE EVATKAILRP GICYGCKDTL SNIVDNTLAF LRNAQEIDTL REHYFEDLVQ LEKYVLAELV
201: CVLQEVRPFF SVGDAMWCLL ICDMNVSHAC AMDCNPLSSL GNDNTTSAGS SSQAEPQSKA ETKCPELSLL SPSKSIPAGS HYSQSKKPFV TGIPVVNNLN
301: SQIIGGTSEK EGASCGSECI NKAFSAAGTS QSGLMEEKRG TVRKVHSGST MRDYVLRHKS FHVEKKFRTY ELKGSSRGGK VNGLSGLVLD KKLKSVSESS
401: TINLKSASLQ ISKAMGIDTT QDNINVNFSS NAGTSTSTAF SPVDSSNAVC RSTNTSFAIN AAHTIPLFSC PASLSATNTD LSLSLSSKIK PSTESVCSNN
501: EAPNSSYMGI PYNNIKSPRQ WIPQDGKDEM LLKLFPRVQE LQNQLQEWTE WANQKVMQAA CRLSKEKAEL QTLRQEKEEV ERLKKEKQSL EENTLKKLSE
601: MENALCKVSG QVERANAAVR KLEVEKAALR KEMEAAKIHA TETAASCQEV SRREKKAQIK FQSWEKQKSF FKEELTIEKQ KLAQLLHELE QARVQQEQVE
701: GRWQQEAKAK EELILQASSI RKEREQIEES GKSKEDAIKL KAERNLQSYR DDIQKLEKEI SQLRLKTDSS KIATLRMGID GCYARKFLDI KNGTAQKEPW
801: ASFISELVID HSATGSVKRE RECVMCLSEE MSVVFLPCAH QVVCTPCNEL HEKQGMQDCP SCRSPIQQRI AVRFPRY
101: INDADWSDLT EAQLEELVLT NLDIILKSAI KKIVACGYTE EVATKAILRP GICYGCKDTL SNIVDNTLAF LRNAQEIDTL REHYFEDLVQ LEKYVLAELV
201: CVLQEVRPFF SVGDAMWCLL ICDMNVSHAC AMDCNPLSSL GNDNTTSAGS SSQAEPQSKA ETKCPELSLL SPSKSIPAGS HYSQSKKPFV TGIPVVNNLN
301: SQIIGGTSEK EGASCGSECI NKAFSAAGTS QSGLMEEKRG TVRKVHSGST MRDYVLRHKS FHVEKKFRTY ELKGSSRGGK VNGLSGLVLD KKLKSVSESS
401: TINLKSASLQ ISKAMGIDTT QDNINVNFSS NAGTSTSTAF SPVDSSNAVC RSTNTSFAIN AAHTIPLFSC PASLSATNTD LSLSLSSKIK PSTESVCSNN
501: EAPNSSYMGI PYNNIKSPRQ WIPQDGKDEM LLKLFPRVQE LQNQLQEWTE WANQKVMQAA CRLSKEKAEL QTLRQEKEEV ERLKKEKQSL EENTLKKLSE
601: MENALCKVSG QVERANAAVR KLEVEKAALR KEMEAAKIHA TETAASCQEV SRREKKAQIK FQSWEKQKSF FKEELTIEKQ KLAQLLHELE QARVQQEQVE
701: GRWQQEAKAK EELILQASSI RKEREQIEES GKSKEDAIKL KAERNLQSYR DDIQKLEKEI SQLRLKTDSS KIATLRMGID GCYARKFLDI KNGTAQKEPW
801: ASFISELVID HSATGSVKRE RECVMCLSEE MSVVFLPCAH QVVCTPCNEL HEKQGMQDCP SCRSPIQQRI AVRFPRY
001: MSIVQKQEEM NGCGLNVDKV EAFTVSPQEK GRKNKRKLAD PSQPNASSLT EFPPYELPSL KPQNHLSGNG SVGEVSNQLQ VEVSESVEWD DPFACHLEEL
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG
Arabidopsis Description
RF4Putative E3 ubiquitin-protein ligase RF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVT8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.