Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99333 | Sorghum | nucleus, plastid | 68.97 | 91.98 |
| Zm00001d006317_P002 | Maize | plastid | 66.22 | 87.5 |
| HORVU1Hr1G018310.1 | Barley | cytosol | 56.94 | 73.94 |
| TraesCS1B01G101700.1 | Wheat | cytosol | 56.59 | 73.56 |
| TraesCS1D01G085400.1 | Wheat | cytosol | 56.59 | 73.56 |
| TraesCS1A01G084200.1 | Wheat | cytosol | 56.32 | 73.3 |
| Os05t0141500-01 | Rice | nucleus, plastid | 56.23 | 73.27 |
| Solyc10g050590.1.1 | Tomato | cytosol | 1.95 | 43.14 |
| GSMUA_Achr3P23730_001 | Banana | nucleus | 25.64 | 40.17 |
| Bra033393.1-P | Field mustard | nucleus | 9.55 | 40.15 |
| Solyc09g074160.1.1 | Tomato | cytosol | 2.12 | 40.0 |
| GSMUA_Achr2P01510_001 | Banana | nucleus | 26.17 | 36.68 |
| CDX91265 | Canola | cytosol, mitochondrion, nucleus | 8.4 | 36.26 |
| PGSC0003DMT400009741 | Potato | nucleus | 3.54 | 35.09 |
| CDY22093 | Canola | nucleus | 13.7 | 35.07 |
| KRH20958 | Soybean | nucleus, plastid | 25.91 | 33.18 |
| KRH11313 | Soybean | nucleus, plastid | 25.91 | 33.11 |
| VIT_05s0020g02320.t01 | Wine grape | nucleus | 25.82 | 32.81 |
| KRH02160 | Soybean | nucleus | 25.29 | 32.61 |
| Solyc01g080430.2.1 | Tomato | nucleus | 24.31 | 32.09 |
| Solyc08g016350.1.1 | Tomato | extracellular | 2.03 | 31.94 |
| PGSC0003DMT400081760 | Potato | plastid | 25.29 | 31.74 |
| KRH50955 | Soybean | nucleus | 24.76 | 31.46 |
| Bra036227.1-P | Field mustard | plastid | 18.39 | 29.46 |
| AT1G03365.2 | Thale cress | nucleus | 19.1 | 26.25 |
| AT4G03000.2 | Thale cress | nucleus | 18.74 | 26.04 |
| CDY21932 | Canola | nucleus, plastid | 18.83 | 25.91 |
| CDX89896 | Canola | nucleus | 19.01 | 25.66 |
| Solyc09g074140.1.1 | Tomato | nucleus | 12.11 | 25.14 |
| KRH71485 | Soybean | cytosol, endoplasmic reticulum, nucleus | 18.3 | 24.82 |
| Solyc06g008900.2.1 | Tomato | nucleus | 17.77 | 23.87 |
| Solyc10g050610.1.1 | Tomato | nucleus | 6.63 | 23.58 |
| PGSC0003DMT400009742 | Potato | nucleus | 16.09 | 22.47 |
| PGSC0003DMT400074463 | Potato | cytosol | 8.66 | 22.37 |
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 12.47 | 22.0 |
| Solyc09g074150.1.1 | Tomato | nucleus | 7.87 | 21.87 |
| Solyc09g074120.1.1 | Tomato | nucleus | 10.34 | 21.43 |
| Zm00001d005154_P001 | Maize | nucleus | 14.85 | 21.35 |
| Solyc09g074190.1.1 | Tomato | nucleus | 15.03 | 21.17 |
| Solyc09g074200.1.1 | Tomato | nucleus | 14.94 | 20.94 |
| Solyc09g074130.1.1 | Tomato | endoplasmic reticulum | 12.64 | 20.55 |
| CDY18168 | Canola | nucleus | 8.84 | 19.34 |
| Solyc08g016370.1.1 | Tomato | cytosol, extracellular, plasma membrane | 1.86 | 17.5 |
| Solyc09g074170.1.1 | Tomato | cytosol | 4.69 | 16.56 |
Protein Annotations
| EntrezGene:103633130 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A1D6IAP2 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0016874 | InterPro:IPR001841 | InterPro:IPR013083 | ProteinID:ONM57046.1 | PFAM:PD968187 |
| PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF143 | SUPFAM:SSF57850 | UniParc:UPI0004DEA637 |
| EnsemblPlantsGene:Zm00001d021404 | EnsemblPlants:Zm00001d021404_P001 | EnsemblPlants:Zm00001d021404_T001 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Putative E3 ubiquitin-protein ligase RF4
Coordinates
chr7:+:151347708..151355546
Molecular Weight (calculated)
124603.0 Da
IEP (calculated)
4.810
GRAVY (calculated)
-0.540
Length
1131 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGHQGGLKEA TSLEIEATTM SSDLDKAVGW DLPRLELKAM VLRWDNKGAT CLVPKEAATI QGLGEATCRA LKTSRMSWDL DKDDKGNLNE VSGLESILGL
0101: EEDVEWNLDE VPGLEHCSDL DEDVEWDLDE VPGLETSSDL DDDAEWNLDE VLGVESSSDL EGDEWNLNEV RGLESSSSLD EDVELNLTEV PGLEPSSDLD
0201: EDVESNLDKV PGLESEEIED HYEPTRHVFV FSSIRRVATW SVQSVREEFI RIFVCVASFL RRISCSFWGR KASSLMSTIA TPPPPIAQEK AASRNKRKYR
0301: AEPPSAELGP YGLEYPLTAD CMGFEFMSPE KAAMAAAVAA AEGVSLDLLQ NSCEKCKDLH PTAEELLDCQ RYVNWSDPNE TQLEEILLKS LGTTFDNAVS
0401: LITTMGYSEA VARAAVVRAA AQYNWRESLA GFGEAAVEVL KTEGDMLPRE GASVEDMRRI EQAVLGSMVM WVNEAQPLCT TGDVMFCLLM SDMNVANASA
0501: MDYNTSSLPS VAAQVIAQPD AGNYVTGSGS NLSVSITNPQ TGVTFRGKLT PMPPGSYGAV KADSSMAPAS LNVSSTKPSV PGKTQCVIPN IEPKEQPVPI
0601: HDHSEDQPFV AAATQSVKND KPSPSKRGGS KRDSLHRQKL TSFDKSSRAL GSKGSLRSGK HSYSASAVLE RKCRSFSDST TSNLKGASRV AKGFAASISG
0701: SEVSADLSFT GTLSPSPSFD AKIVSNSNPA PTASTDLSLS LPSSSDSLTP SSNHDSITEG VDSSSKINFS YDEEQKVWIP QDKKDKIVLI LVQRQKELQA
0801: HMHDWTDWAQ QKVMQVAHRL AKEKDELQSL RKEKEEADRL QEERHHLEES TRKKLLEMES AISRANAQLE KAEASARRRE VENAQLTLQM EAAKRHAAES
0901: ATNISELLKK DENSRKRSQR WESDRALLQE ELAAQKSRLF RVQEQLQHAK ELKDQVQARW KQEEAAKTEA IALVTSVRKE RGQIETSMRS EENLLHLKAA
1001: NDAQRYKSEI RVLEQRIAQL KVSLDSSRVA APKWGADNKS YALHLSEGRK NNNAQVLSNT AVPQGLDFDD IQRDRECVMC LSEEMSVVFL PCAHQVVCAK
1101: CSDLHEKQGM KECPSCRAPI QRRVRARPAG C
0101: EEDVEWNLDE VPGLEHCSDL DEDVEWDLDE VPGLETSSDL DDDAEWNLDE VLGVESSSDL EGDEWNLNEV RGLESSSSLD EDVELNLTEV PGLEPSSDLD
0201: EDVESNLDKV PGLESEEIED HYEPTRHVFV FSSIRRVATW SVQSVREEFI RIFVCVASFL RRISCSFWGR KASSLMSTIA TPPPPIAQEK AASRNKRKYR
0301: AEPPSAELGP YGLEYPLTAD CMGFEFMSPE KAAMAAAVAA AEGVSLDLLQ NSCEKCKDLH PTAEELLDCQ RYVNWSDPNE TQLEEILLKS LGTTFDNAVS
0401: LITTMGYSEA VARAAVVRAA AQYNWRESLA GFGEAAVEVL KTEGDMLPRE GASVEDMRRI EQAVLGSMVM WVNEAQPLCT TGDVMFCLLM SDMNVANASA
0501: MDYNTSSLPS VAAQVIAQPD AGNYVTGSGS NLSVSITNPQ TGVTFRGKLT PMPPGSYGAV KADSSMAPAS LNVSSTKPSV PGKTQCVIPN IEPKEQPVPI
0601: HDHSEDQPFV AAATQSVKND KPSPSKRGGS KRDSLHRQKL TSFDKSSRAL GSKGSLRSGK HSYSASAVLE RKCRSFSDST TSNLKGASRV AKGFAASISG
0701: SEVSADLSFT GTLSPSPSFD AKIVSNSNPA PTASTDLSLS LPSSSDSLTP SSNHDSITEG VDSSSKINFS YDEEQKVWIP QDKKDKIVLI LVQRQKELQA
0801: HMHDWTDWAQ QKVMQVAHRL AKEKDELQSL RKEKEEADRL QEERHHLEES TRKKLLEMES AISRANAQLE KAEASARRRE VENAQLTLQM EAAKRHAAES
0901: ATNISELLKK DENSRKRSQR WESDRALLQE ELAAQKSRLF RVQEQLQHAK ELKDQVQARW KQEEAAKTEA IALVTSVRKE RGQIETSMRS EENLLHLKAA
1001: NDAQRYKSEI RVLEQRIAQL KVSLDSSRVA APKWGADNKS YALHLSEGRK NNNAQVLSNT AVPQGLDFDD IQRDRECVMC LSEEMSVVFL PCAHQVVCAK
1101: CSDLHEKQGM KECPSCRAPI QRRVRARPAG C
001: MSIVQKQEEM NGCGLNVDKV EAFTVSPQEK GRKNKRKLAD PSQPNASSLT EFPPYELPSL KPQNHLSGNG SVGEVSNQLQ VEVSESVEWD DPFACHLEEL
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG
Arabidopsis Description
RF4Putative E3 ubiquitin-protein ligase RF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVT8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.