Factsheet for Solyc01g080430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081760	Potato	plastid	91.83	87.35
VIT_05s0020g02320.t01	Wine grape	nucleus	60.44	58.2
KRH02160	Soybean	nucleus	53.91	52.68
KRH20958	Soybean	nucleus, plastid	54.26	52.66
KRH11313	Soybean	nucleus, plastid	54.26	52.54
KRH50955	Soybean	nucleus	53.09	51.12
Solyc10g050590.1.1	Tomato	cytosol	2.68	45.1
GSMUA_Achr2P01510_001	Banana	nucleus	41.42	43.99
Solyc09g074160.1.1	Tomato	cytosol	3.03	43.33
GSMUA_Achr3P23730_001	Banana	nucleus	36.06	42.8
GSMUA_Achr3P09160_001	Banana	nucleus	34.54	40.33
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	5.25	37.5
Solyc08g016350.1.1	Tomato	extracellular	3.03	36.11
TraesCS1A01G084200.1	Wheat	cytosol	32.91	32.45
EER99333	Sorghum	nucleus, plastid	32.09	32.43
Os05t0141500-01	Rice	nucleus, plastid	32.79	32.37
TraesCS1B01G101700.1	Wheat	cytosol	32.79	32.3
TraesCS1D01G085400.1	Wheat	cytosol	32.56	32.07
HORVU1Hr1G018310.1	Barley	cytosol	32.44	31.92
Solyc06g008900.2.1	Tomato	nucleus	31.16	31.71
Zm00001d006317_P002	Maize	plastid	31.16	31.19
Solyc10g050610.1.1	Tomato	nucleus	11.2	30.19
Solyc09g074140.1.1	Tomato	nucleus	19.02	29.91
Solyc09g074120.1.1	Tomato	nucleus	17.85	28.02
Solyc08g006980.2.1	Tomato	nucleus	23.57	27.9
Solyc09g074200.1.1	Tomato	nucleus	26.25	27.88
Solyc09g074190.1.1	Tomato	nucleus	25.79	27.52
Solyc08g077100.2.1	Tomato	nucleus	13.19	26.71
Solyc09g074150.1.1	Tomato	nucleus	12.14	25.55
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	20.42	25.14
Zm00001d021404_P001	Maize	cytosol	32.09	24.31
OQU88874	Sorghum	nucleus	20.89	22.66
Solyc09g074170.1.1	Tomato	cytosol	8.05	21.56
Zm00001d005154_P001	Maize	nucleus	19.49	21.22
Os05t0141400-01	Rice	plastid	3.85	14.73

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4AXT7	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g080430.2	EnsemblPlants:Solyc01g080430.2.1
UniParc:UPI0002762347	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:79666308..79671359

Molecular Weight (calculated)

95594.4 Da

IEP (calculated)

6.111

GRAVY (calculated)

-0.506

Length

857 amino acids

Sequence
(BLAST)

001: MISSPQFECT SFEFSADKFG MIPTHELSNG CDMCSLKQDS SESLKLDLGL SCSVGSSEVG PSEPREVVET TEQFHDADWS DFTEAQLEEL VLNNLDTIFR
101: SAIKRIMAFG YSEEIATKAV LRSGICYGCK DIVSNIVENT LVFLRSGHDI DSSGEHYFED LLQMEKYVLA ELVCVLREVR PFFSTGDAMW CLLICDMNVS
201: HACAMESDPL SSLVVDSSEN SSASLQPHLQ SEAKSSESIT RIPCKPNPSV ACAHCSTDTS NVSSAISGHS FQLEASNMPG VHEIKPKPSF ALTGIIPEKD
301: SSSSLFDTVD KTFTATGAPN PPIVEEEFVG TRKVSGITKR EYILRQKSLH LEKHYRTYGS KGVSRKFNGF SGLVLDNKLK SMADSAGMNI KNASLKVNKI
401: SVAGRNDNVH HSISTNNGFS STSVFGSNNG NGPVPLPNTN IPSSSPQVST SPALPAADTE LSLSFPASNM TPMPLSYNAG AGVCAFNMIP NEKSIAQWVP
501: QDKKDEMILK LVPRVHELQG QLQEWTEWAN QKVMQAARRL SKDKAELKTL RQEKEEVERL KKEKQSLEEN TMKKLAEMEN ALFKAKGQFE RANAAVRRLE
601: IEKDLLKRDM EAAKLRAAEL AGSCQEVSKR ENKTLMKFQS WEKQKAILQD ELAAERRKLV ELQQQLEQAK DVLNQLEGRW KQEKNATEDL LRQASSLRKE
701: REQIETSAKS KEDMTKLKAE SSLQKYKDDI ERLEKEISQL RLKTDSSKIA ALKRGIDGSY ASKLTDFRNA PLPKDTQIPY ISTFVTDFEE YSQDGGVKRE
801: RECVMCLSEE MSVVFLPCAH QVVCTTCNEL HEKQGMKECP SCRSLIQQRI CARYNHT

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.