Factsheet for Solyc08g006980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g009560.2.1
Solyc08g006980.2.1
Solyc08g077100.2.1
Solyc12g008680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32530.1	Solyc05g009560.2.1	AT1G13330.1	19187040
AT1G32530.1	Solyc08g006980.2.1	AT1G32530.1	19187040
AT1G32530.1	Solyc08g077100.2.1	AT1G32530.1	19187040
AT1G32530.1	Solyc12g008680.1.1	AT4G29170.1	19187040

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052886	Potato	nucleus	83.84	83.96
KRH58212	Soybean	nucleus	51.24	51.74
KRH04325	Soybean	nucleus	48.48	51.69
Bra005352.1-P	Field mustard	nucleus	21.96	51.62
VIT_02s0012g01020.t01	Wine grape	nucleus	50.14	50.21
CDX84219	Canola	mitochondrion, nucleus	40.47	49.49
Bra023274.1-P	Field mustard	nucleus	45.17	47.6
CDX93827	Canola	cytosol	45.03	47.45
CDY31680	Canola	mitochondrion, nucleus	37.02	47.27
AT2G35330.1	Thale cress	endoplasmic reticulum	47.65	46.75
CDY01268	Canola	cytosol	43.92	46.29
AT1G32530.1	Thale cress	cytosol	45.3	46.13
Solyc10g050590.1.1	Tomato	cytosol	3.18	45.1
KRH28281	Soybean	nucleus, plastid	41.02	43.87
Solyc08g077100.2.1	Tomato	nucleus	25.41	43.5
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	38.67	41.67
Solyc09g074160.1.1	Tomato	cytosol	3.45	41.67
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	37.02	39.59
Os09t0371700-01	Rice	nucleus	11.19	38.03
Solyc08g016350.1.1	Tomato	extracellular	3.59	36.11
TraesCS5D01G202000.1	Wheat	mitochondrion	32.46	35.66
TraesCS5B01G194700.1	Wheat	mitochondrion	32.32	35.51
Zm00001d020292_P001	Maize	mitochondrion, nucleus	31.08	35.1
TraesCS5A01G189000.1	Wheat	mitochondrion	31.91	35.05
KXG35515	Sorghum	mitochondrion	31.08	34.94
HORVU5Hr1G058760.1	Barley	plastid	32.18	32.14
OQU93157	Sorghum	plastid	8.84	29.22
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	4.28	25.83
Solyc10g050610.1.1	Tomato	nucleus	10.36	23.58
Solyc01g080430.2.1	Tomato	nucleus	27.9	23.57
Solyc09g074140.1.1	Tomato	nucleus	17.54	23.3
Solyc09g074150.1.1	Tomato	nucleus	12.15	21.62
Solyc09g074200.1.1	Tomato	nucleus	23.34	20.94
Solyc09g074120.1.1	Tomato	nucleus	15.75	20.88
Solyc06g008900.2.1	Tomato	nucleus	23.62	20.31
Solyc09g074190.1.1	Tomato	nucleus	22.24	20.05
Solyc09g074170.1.1	Tomato	cytosol	8.43	19.06
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	17.27	17.96

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4CII5	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF133	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc08g006980.2	EnsemblPlants:Solyc08g006980.2.1
UniParc:UPI000276C24A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:1555009..1559443

Molecular Weight (calculated)

80114.6 Da

IEP (calculated)

7.989

GRAVY (calculated)

-0.716

Length

724 amino acids

Sequence
(BLAST)

001: MSSKEKYMRN NRRSRSGRTD HDYNSQSSSN RNRNRSSLDF SGISESGVRQ LNAESETAQQ SNPINVGSDG DSGSGSGVDE GGLNICTEDQ LEAILLQKLE
101: VLYGEAIAKI TKLGYGEEGV MKAMLKNGHC YGGMDVLTNI LHNALSYLNN GYVNSGSSSS GDESDQSFVD LRQLVEYSLA GLICLLQQMK PHLSKADAMW
201: CLLVSDLHVG RASVMEIPDG SGRTTGSLSG GGTSTNVEGV ATGPIGVVPA MCRFHGGWGF GNSTGNAYPL NKSSAITSDS TPYKEIDCPK RFNLTPSMRT
301: LLKRNVAAFT AGLRSNPKYM QSQSRVSSSS LTDGDQSSGL AQSGVSQTSK SQDVNCVVGK FQDLNLDENT QQQSKGNEDL DQKDEMLLSL LDQIKDLEKQ
401: VKERKDWAHQ KAMQAARKLS NDLTELKMLR MEKEDIQRMK KGKPAVEDAT MKKLSEMETS LRTASANVDR SNMFVKKLQE DNAEMKAELE AQKLSASESA
501: KKCAEAAKRE KKCLKKLAVW DKKKKKLQEE IAAEKQNISD MQNQLAQSEV AIKDAEVKWR LEQKARQQAS ALVDEERRLK EAVEANNKRK LEELRSKAEI
601: DFQRHKDDLQ RLEQDLSRLK ASTELQNQSA NVVTGSNVEQ HPHGDIARML RELDNSQEYS PVKEDSRECI ICMKHEVSVV FLPCAHQVLC SSCNDNFGKK
701: GRVSKCPCCR APIERRIRVF GATS

Best Arabidopsis Sequence Match ( AT2G35330.2 )
(BLAST)

001: MGCTVREKHV RPNRKTRSVK PEFDPCCLLD RTALSKSIVE SSLKHLVYHP GLLDSCPESN PSGSFEDNNG WGYCTEEQLE DILLKHLEYL YNEAISKLVG
101: SGYDEDVALR AVLSNGYCYG GMDVMTNILH NSLAYLKSNT GEGSNVNNED QSETVFTDLR QLEEYSLAGM VYLLQQVKPN LSKGDAMWCL LMSELHVGRA
201: STMDIPSSGK GDSSNVGVGG ASSTVNGVGG AIAPALCRFH GGWGFGNGKG PKFSGNGFSL HSEELTLQRE IDCPRRFNLS PSMKSLLREN VAAFAAGYRA
301: SMEQKKQVQM QSETSGTSLS CTAAATHSEK CEQPHVFGSE ECFSSVLEKF RDLNLDDNVD SAPEELKDDA LIGLLQQVQD LKKQLKERKD WAQKKAMQAA
401: QKVSDELSEL KSLRSEREEI QRVKKGKQTR EDSTLKKLSE MENALRKASG QVDKANAVVR ALENESAEIR AEMEASKLSA SESLTACMEA SKKEKKCLKK
501: LLAWEKQKMK LQDEITAEKE KIKALNRALA QITQEEKEYE AKWRQEQKAK EQVLAQVEEE QRSKEAIEAS NKRKVESLRL KIEIDFQRHK DDLQRLEQEL
601: SRLNKASSTD SSLQSNNTSH TKVKSDKSKG ETMSKLLEEL NRLDGSYEKE ANYDRECLIC MKDEVSVVFL PCAHQVVCAS CSDSFMGSGK ATCPCCRAPV
701: QQRIRVFGAS S

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.