Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31680 | Canola | mitochondrion, nucleus | 97.4 | 52.91 |
| Os09t0371700-01 | Rice | nucleus | 23.7 | 34.27 |
| AT2G35330.1 | Thale cress | endoplasmic reticulum | 78.9 | 32.93 |
| Solyc08g077100.2.1 | Tomato | nucleus | 43.18 | 31.44 |
| Bra023274.1-P | Field mustard | nucleus | 67.53 | 30.28 |
| Bra033393.1-P | Field mustard | nucleus | 24.35 | 27.88 |
| KRH04325 | Soybean | nucleus | 59.09 | 26.8 |
| KRH58212 | Soybean | nucleus | 59.42 | 25.52 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 58.12 | 24.76 |
| GSMUA_Achr1P24020_001 | Banana | mitochondrion, nucleus | 52.6 | 24.11 |
| KRH28281 | Soybean | nucleus, plastid | 51.95 | 23.63 |
| GSMUA_Achr7P04700_001 | Banana | mitochondrion, nucleus | 50.0 | 22.75 |
| PGSC0003DMT400052886 | Potato | nucleus | 52.27 | 22.27 |
| Solyc08g006980.2.1 | Tomato | nucleus | 51.62 | 21.96 |
| KXG35515 | Sorghum | mitochondrion | 41.23 | 19.72 |
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 40.58 | 19.5 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 38.96 | 18.21 |
| TraesCS5D01G202000.1 | Wheat | mitochondrion | 38.96 | 18.21 |
| TraesCS5B01G194700.1 | Wheat | mitochondrion | 38.64 | 18.06 |
| HORVU5Hr1G058760.1 | Barley | plastid | 37.99 | 16.14 |
| Bra036227.1-P | Field mustard | plastid | 29.87 | 13.03 |
| OQU93157 | Sorghum | plastid | 0.97 | 1.37 |
Protein Annotations
| EnsemblPlants:Bra005352.1 | EnsemblPlants:Bra005352.1-P | EnsemblPlantsGene:Bra005352 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF133 | PFAM:PF13920 |
| PFscan:PS50089 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0002547E53 | UniProt:M4CMB4 | MapMan:35.1 |
Description
AT2G35330 (E=2e-111) | protein binding / zinc ion binding
Coordinates
chrA05:-:4977298..4978289
Molecular Weight (calculated)
35403.9 Da
IEP (calculated)
5.486
GRAVY (calculated)
-0.897
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAAQKVSDE LSELQSLRSV RDENLRLKKG KQSGDDSTVK RISEMESDLR KVSSHVDKAG MIARRLENEN AVIRAEIEAS KLSESESLTA CIEATKKEKK
101: RLKRLVAWEK QKKKLQEEID GEKEKIKALE RGLAQIKQEE KEYEEKWREE QEAKEQALAQ VEEEQRSKEA TEVRNKRNVE SLRLKIEIDF QRHKDDLQRL
201: EQELSRLNKD SSTDASLQSN NISQTKGEVV FKLLEELERL DGLYEKEESY DRECLICMKD EVSVVFLPCA HQVVCASCSE SFMGGDKATC PCCRASVQQR
301: IRVFGATS
101: RLKRLVAWEK QKKKLQEEID GEKEKIKALE RGLAQIKQEE KEYEEKWREE QEAKEQALAQ VEEEQRSKEA TEVRNKRNVE SLRLKIEIDF QRHKDDLQRL
201: EQELSRLNKD SSTDASLQSN NISQTKGEVV FKLLEELERL DGLYEKEESY DRECLICMKD EVSVVFLPCA HQVVCASCSE SFMGGDKATC PCCRASVQQR
301: IRVFGATS
001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.