Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G202000.1 | Wheat | mitochondrion | 98.94 | 98.94 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 96.05 | 96.05 |
| HORVU5Hr1G058760.1 | Barley | plastid | 89.38 | 81.24 |
| Os09t0371700-01 | Rice | nucleus | 22.91 | 70.89 |
| KXG35515 | Sorghum | mitochondrion | 62.52 | 63.98 |
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 61.46 | 63.18 |
| OQU93157 | Sorghum | plastid | 15.02 | 45.21 |
| GSMUA_Achr1P24020_001 | Banana | mitochondrion, nucleus | 40.97 | 40.18 |
| GSMUA_Achr7P04700_001 | Banana | mitochondrion, nucleus | 40.52 | 39.44 |
| Bra005352.1-P | Field mustard | nucleus | 18.06 | 38.64 |
| CDX84219 | Canola | mitochondrion, nucleus | 31.87 | 35.47 |
| CDY31680 | Canola | mitochondrion, nucleus | 30.05 | 34.92 |
| KRH04325 | Soybean | nucleus | 35.36 | 34.32 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 36.72 | 33.47 |
| Solyc08g077100.2.1 | Tomato | nucleus | 21.4 | 33.33 |
| PGSC0003DMT400052886 | Potato | nucleus | 36.27 | 33.06 |
| KRH58212 | Soybean | nucleus | 35.96 | 33.05 |
| Solyc08g006980.2.1 | Tomato | nucleus | 35.51 | 32.32 |
| CDX93827 | Canola | cytosol | 33.54 | 32.17 |
| Bra023274.1-P | Field mustard | nucleus | 33.54 | 32.17 |
| CDY01268 | Canola | cytosol | 32.63 | 31.3 |
| AT2G35330.1 | Thale cress | endoplasmic reticulum | 34.75 | 31.03 |
| AT1G32530.1 | Thale cress | cytosol | 32.93 | 30.52 |
| KRH28281 | Soybean | nucleus, plastid | 30.96 | 30.13 |
| TraesCS1B01G101700.1 | Wheat | cytosol | 24.28 | 18.39 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G194700.1 | EnsemblPlantsGene:TraesCS5B01G194700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF165 | PFAM:PF13920 | PFscan:PS50089 |
| SEG:seg | SUPFAM:SSF57850 | TIGR:cd16449 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5B:+:351481479..351485847
Molecular Weight (calculated)
73310.8 Da
IEP (calculated)
7.887
GRAVY (calculated)
-0.827
Length
659 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQPRERGS RAARKGRPVR TPATLLALNP TPDPDLSAQA SDDVSPWGRS TADELEDRLL KRLEEAYAAA LAGLAELGYA EDAALRAVLR AGHCYGKLDD
101: PVDNIVANAR SFLNDPDAPG GAGGFADLRR LEEYSLAGLV CLLQSSRPTI SRVEAMWCLL ANDLRLEQAI NMGASFTDKS PHSGFSTAES DAPSPAAPAP
201: GQRGYCHFHA TTATENHMFD PETFMRLAMR AHTDSTRPHT ESTAGVVSCV KNTWSRSGGS AAPAPAAPDG QGQPKQSFAM KVSTDDLIES VVMELESLDI
301: DKKDPPAEKP DPKNEMVRDL IKQTREMEEQ LKERKEWAQK KAVQAARKLG NDLTELRMLR MEHDDNQRRK NDKQSLEDET MKRLTRLEYE LKKKSGQLDR
401: SNASVQKLEM ENAEIRAEME AAKLSASETE RQCQILLKKE KKDSKKLELW ERQKAKLQEE IAECKAKIAQ ADKELAGVNK SIRNMEVKIR EDTKTTEDNL
501: ALAEQERGKR ESAKADADRR LEEIRRKTEV ESQCYKDDLR RLQDQLSRLQ KSMGANGPTL PSAYSPAMTD RNTARAPKQP NQKAPPASNR QQEPIQNTGR
601: RRGCIICKRE EACVMLLQCA HQVLCVGCNK QHEEKGAVRC PSCNAKIEER IRVFGASSN
101: PVDNIVANAR SFLNDPDAPG GAGGFADLRR LEEYSLAGLV CLLQSSRPTI SRVEAMWCLL ANDLRLEQAI NMGASFTDKS PHSGFSTAES DAPSPAAPAP
201: GQRGYCHFHA TTATENHMFD PETFMRLAMR AHTDSTRPHT ESTAGVVSCV KNTWSRSGGS AAPAPAAPDG QGQPKQSFAM KVSTDDLIES VVMELESLDI
301: DKKDPPAEKP DPKNEMVRDL IKQTREMEEQ LKERKEWAQK KAVQAARKLG NDLTELRMLR MEHDDNQRRK NDKQSLEDET MKRLTRLEYE LKKKSGQLDR
401: SNASVQKLEM ENAEIRAEME AAKLSASETE RQCQILLKKE KKDSKKLELW ERQKAKLQEE IAECKAKIAQ ADKELAGVNK SIRNMEVKIR EDTKTTEDNL
501: ALAEQERGKR ESAKADADRR LEEIRRKTEV ESQCYKDDLR RLQDQLSRLQ KSMGANGPTL PSAYSPAMTD RNTARAPKQP NQKAPPASNR QQEPIQNTGR
601: RRGCIICKRE EACVMLLQCA HQVLCVGCNK QHEEKGAVRC PSCNAKIEER IRVFGASSN
001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.