CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91004
EER98621
KXG35515
OQU93157

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32530.1	EER91004	AT1G13330.1	19187040
AT1G32530.1	KXG35515	AT1G32530.1	19187040
AT1G32530.1	OQU93157	AT1G32530.1	19187040
AT1G32530.1	EER98621	AT4G29170.1	19187040

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35515	Sorghum	mitochondrion	58.9	20.03
TraesCS5A01G189000.1	Wheat	mitochondrion	46.58	15.48
TraesCS5B01G194700.1	Wheat	mitochondrion	45.21	15.02
TraesCS5D01G202000.1	Wheat	mitochondrion	44.75	14.87
HORVU5Hr1G058760.1	Barley	plastid	46.58	14.07
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	32.88	10.71
CDX84219	Canola	mitochondrion, nucleus	28.77	10.64
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	32.88	10.64
KRH04325	Soybean	nucleus	30.59	9.87
AT1G32530.1	Thale cress	cytosol	31.05	9.56
VIT_02s0012g01020.t01	Wine grape	nucleus	30.59	9.27
KRH58212	Soybean	nucleus	30.14	9.21
CDY01268	Canola	cytosol	28.77	9.17
CDX93827	Canola	cytosol	28.77	9.17
Bra023274.1-P	Field mustard	nucleus	28.77	9.17
Solyc08g006980.2.1	Tomato	nucleus	29.22	8.84
AT2G35330.1	Thale cress	endoplasmic reticulum	29.22	8.67
CDY31680	Canola	mitochondrion, nucleus	22.37	8.64
PGSC0003DMT400052886	Potato	nucleus	27.85	8.44
KRH28281	Soybean	nucleus, plastid	23.29	7.53
OQU88874	Sorghum	nucleus	21.92	6.08
EER99333	Sorghum	nucleus, plastid	18.26	4.72
Solyc08g077100.2.1	Tomato	nucleus	3.65	1.89
Bra005352.1-P	Field mustard	nucleus	1.37	0.97
Os09t0371700-01	Rice	nucleus	0.46	0.47

Protein Annotations

EnsemblPlants:OQU93157	EnsemblPlantsGene:SORBI_3001G490950	PANTHER:PTHR10044	PANTHER:PTHR10044:SF165	ProteinID:OQU93157	ProteinID:OQU93157.1
SEG:seg	UniParc:UPI000B8BA715	UniProt:A0A1Z5SB86	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr1:-:76068979..76075222

Molecular Weight (calculated)

22861.8 Da

IEP (calculated)

5.644

GRAVY (calculated)

-0.310

Length

219 amino acids

Sequence
(BLAST)

001: MPQPSRLLCA NPPAPPIPSS KPANPTPAAS DSDSPVMARQ ALECESSASQ NGRSAAGSQP VSDLDPAAGK DAAPRGRAAT AAELEERLLK RLDELYAAAL
101: ARLADLGHGE EASLEAVLHS GHCYGKLRDP VSNIVANTRA YLSDPPHASR AGGFADLRRL EEYSLAGLVC LLQSSCHTLT RAEAFQCLLA SDLRLEEAIA
201: MGSSLNGERS PASVPSQRG

Best Arabidopsis Sequence Match ( AT1G32530.1 )
(BLAST)

001: MGCTVREKHV KPTRRIKAAA FRSDPPLCWV EKIAMSQSIV ENLVYHPGLT DSGSVNLNSV TENPEENFWA YCTEEHLEEI LLKHLEFLYN QAVSKLLELG
101: YEERVALKAV LSNGHCYGEL DVLTNIVNNS LSYLNSGGGG GGSNGNGEDR TETGFTDLRD LEEYSLAGMI YLLQQVKPNL SKGDAMWCLL MSELHVGRAS
201: TLDVPTNRSS CCTKEDSNVE DVGTGGTLDI AGFMAPALCR FHGGWGFGNG GGPEFSGNGF SMKGAELKLQ REIDCPKRFN LSPSMKSLLK RNVAAFAAGY
301: RASMKQKQIQ SSDTIGDSKA CNDPAIVKSC GQQPRKSGSE ESVSTVLEKF RDLNLDDNLE SVGVDDKDCV IVDLLHQVKD FEKKVKERKE WAQKNAMQAA
401: QKVSEELAEL KTLSSEREGI QLLKKGKQAV EESTAKRFTD KEIELRKACS QNDRANVIVR KLENQNAEIR AEREGSKLSA SESLKACMEA SKKEKKCLKK
501: LVAWEKQILK LQDEITAEKE KIKALYKTLA QITEYEKEIE AKWRQEQKAK EEALAQMEEE QRSKEAAEGH NKRKLETLRL KIELDFQRHK DDHQRLEQEL
601: GRLKASSDSD SSHISNNAWK PKKSQGENIA KLLEEIDKLE GSYDNEANYD RECIICMKDE VSVVFLPCAH QVVCGSCSDS FFASNNGGSK VTCPCCRGLV
701: QQRIRIFGAT S

Arabidopsis Description

MIP1MND1-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.