CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005154_P001	Maize	nucleus	79.49	79.8
Solyc09g074160.1.1	Tomato	cytosol	3.29	43.33
Solyc10g050590.1.1	Tomato	cytosol	2.41	37.25
Solyc08g016350.1.1	Tomato	extracellular	3.29	36.11
PGSC0003DMT400009741	Potato	nucleus	4.05	28.07
Bra033393.1-P	Field mustard	nucleus	9.37	27.51
CDX91265	Canola	cytosol, mitochondrion, nucleus	8.48	25.57
CDY22093	Canola	nucleus	14.05	25.11
Bra036227.1-P	Field mustard	plastid	20.0	22.38
OQU93157	Sorghum	plastid	6.08	21.92
KRH20958	Soybean	nucleus, plastid	23.54	21.06
Solyc01g080430.2.1	Tomato	nucleus	22.66	20.89
VIT_05s0020g02320.t01	Wine grape	nucleus	23.42	20.79
AT1G03365.2	Thale cress	nucleus	21.65	20.78
PGSC0003DMT400081760	Potato	plastid	23.54	20.64
KRH02160	Soybean	nucleus	22.66	20.41
KRH11313	Soybean	nucleus, plastid	22.78	20.34
KRH50955	Soybean	nucleus	22.66	20.11
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	3.04	20.0
EER99333	Sorghum	nucleus, plastid	21.39	19.93
AT4G03000.2	Thale cress	nucleus	20.0	19.41
KXG35515	Sorghum	mitochondrion	15.82	19.41
CDY21932	Canola	nucleus, plastid	20.0	19.22
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	20.13	19.06
PGSC0003DMT400074463	Potato	cytosol	10.51	18.95
Solyc10g050610.1.1	Tomato	nucleus	7.47	18.55
Solyc09g074140.1.1	Tomato	nucleus	12.78	18.53
Solyc09g074120.1.1	Tomato	nucleus	12.78	18.5
CDX89896	Canola	nucleus	19.24	18.14
Solyc06g008900.2.1	Tomato	nucleus	19.11	17.93
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	14.94	16.95
Solyc09g074200.1.1	Tomato	nucleus	17.22	16.85
Solyc09g074190.1.1	Tomato	nucleus	16.96	16.69
PGSC0003DMT400009742	Potato	nucleus	16.84	16.42
CDY18168	Canola	nucleus	10.13	15.47
Solyc09g074170.1.1	Tomato	cytosol	5.95	14.69
Solyc09g074150.1.1	Tomato	nucleus	7.34	14.25
Os05t0141400-01	Rice	plastid	3.04	10.71

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1B6QAK1	ncoils:Coil	InterPro:IPR001841	InterPro:IPR013083
ProteinID:KXG34946.1	EnsemblPlants:OQU88874	ProteinID:OQU88874	ProteinID:OQU88874.1	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	SMART:SM00184	EnsemblPlantsGene:SORBI_3002G112000	SUPFAM:SSF57850	UniParc:UPI00081AD249
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:13657690..13662990

Molecular Weight (calculated)

88047.6 Da

IEP (calculated)

6.839

GRAVY (calculated)

-0.472

Length

790 amino acids

Sequence
(BLAST)

001: MGAAGNCSDP YRSHVGERDD TSSDIKLGPD FTAAQKQANP VSGDLSLIRV KLEQSLSSVQ AFIAEHVSPK DIDLDWSKEV IVGLDGFRYV GCNDLRDVVL
101: NSLHMFFKTA VDILSCQGHT EDAVVNAVRD SALCYQFDGP ITKIVEHSRT LLQSGNRLVD RSYSENVDTV LHMLGLYFLC NASSLLKKYC PFFTLGDALW
201: CILLCDMDIS IARAAFAPMS GYGNGQSEGY AHSQSDLCEG RESVNELSEE YSCRDTESPA LFEPPQPEAI EMTWSNFLTN YIVSLSFQKF GGKNQDAPSA
301: QCENSPSVPR AVNKKETKGK RSKTNSMKSQ KDSGKDLVVF KNIPQVKGII SKTSFRMLKE NKTLTAFLAS AHSTLAGTSE VASEKDSQTS MLVPTKPRSG
401: PCSVKTGYSP AVVSIGSLSY PPSCSSNSSS SAMGKTEPRQ RMEPDVVHFS LPNTPAEGFE FHFSREGLQT TWVPKDRKEE LALKLVHRLG ELKLEVQIWT
501: DWANERVMQS TNRLINERTV LFSLKKDKTD FEESDVLTRK RLEETQRAID STSCELDRVN SLVQELTGKI SLCRREKKAV QLQGEQADAS LASIKSKKTE
601: SMNRLKSMET EKILLQEEIA AERSKLSKLL QSLEQARRDE DILTKRCQEG EKMKDALMKQ VNFERTELER IETLGRAKSS HLLLKARNDQ EWLQTSIKNL
701: TQQIGEMSSR SKSPSITNFM GCPGFVIDSV QREQECAMCL EEEVSVVFLP CGHQVVCAGC NQRHRDGGMT ECPSCRSPIK RRICARFADS

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.