Factsheet for Solyc09g074130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074160.1.1	Tomato	cytosol	7.47	86.67
PGSC0003DMT400009741	Potato	nucleus	14.08	85.96
Solyc10g050590.1.1	Tomato	cytosol	5.17	70.59
Solyc08g016350.1.1	Tomato	extracellular	6.75	65.28
Solyc09g074140.1.1	Tomato	nucleus	50.57	64.59
Solyc09g074120.1.1	Tomato	nucleus	46.12	58.79
Solyc09g074150.1.1	Tomato	nucleus	30.89	52.83
Solyc10g050610.1.1	Tomato	nucleus	19.25	42.14
Solyc09g074190.1.1	Tomato	nucleus	46.55	40.35
Solyc09g074200.1.1	Tomato	nucleus	45.55	39.28
Bra033393.1-P	Field mustard	nucleus	13.36	34.57
CDY22093	Canola	nucleus	21.7	34.16
CDX91265	Canola	cytosol, mitochondrion, nucleus	12.21	32.44
Solyc06g008900.2.1	Tomato	nucleus	32.18	26.6
Bra036227.1-P	Field mustard	plastid	25.43	25.07
Solyc09g074170.1.1	Tomato	cytosol	10.78	23.44
CDY21932	Canola	nucleus, plastid	26.15	22.14
AT1G03365.2	Thale cress	nucleus	26.01	21.99
AT4G03000.2	Thale cress	nucleus	25.57	21.87
GSMUA_Achr3P09160_001	Banana	nucleus	22.27	21.12
GSMUA_Achr3P23730_001	Banana	nucleus	21.7	20.91
CDX89896	Canola	nucleus	25.14	20.88
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	25.0	20.86
Solyc01g080430.2.1	Tomato	nucleus	25.14	20.42
Solyc08g077100.2.1	Tomato	nucleus	11.93	19.62
GSMUA_Achr2P01510_001	Banana	nucleus	22.13	19.08
TraesCS1B01G101700.1	Wheat	cytosol	21.98	17.59
TraesCS1D01G085400.1	Wheat	cytosol	21.7	17.36
HORVU1Hr1G018310.1	Barley	cytosol	21.7	17.34
Solyc08g006980.2.1	Tomato	nucleus	17.96	17.27
TraesCS1A01G084200.1	Wheat	cytosol	21.55	17.26
EER99333	Sorghum	nucleus, plastid	20.55	16.86
Os05t0141500-01	Rice	nucleus, plastid	20.98	16.82
Zm00001d006317_P002	Maize	plastid	20.11	16.36
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	2.59	15.0
OQU88874	Sorghum	nucleus	16.95	14.94
CDY18168	Canola	nucleus	11.06	14.89
Zm00001d005154_P001	Maize	nucleus	15.52	13.72
Zm00001d021404_P001	Maize	cytosol	20.55	12.64
Os05t0141400-01	Rice	plastid	3.74	11.61

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4CUZ0	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF164	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc09g074130.1	EnsemblPlants:Solyc09g074130.1.1
UniParc:UPI000276B196	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:65870256..65874926

Molecular Weight (calculated)

79490.9 Da

IEP (calculated)

6.656

GRAVY (calculated)

-0.663

Length

696 amino acids

Sequence
(BLAST)

001: MILNSVARLI MLVKEMLPFL IEKVVISFEA NGPEAFREDN IPKNNIVVLF SGNIVLGVMS ILQEEHASIN IELSLTMMVS HNSITLVHQK KIWSIPYFGR
101: RTYLTTRVDN QANFFKMSGT HGEIMLRMIS SSVIKERVYY SSNKHSKKNV NMVDDNICDD ADENSLAISD KEKGSTNKRK FESKIPLGTS SDSHGSSLTE
201: FQRFDLLEKP KKGVTLSEID PLTSGCPQYE AEQEVENAPN IDSEDMSACC SFVLDKKLDS SSSGETKKSS HSKMKILVKC NQPLAKESFD SQCLSSPIAP
301: ASDTSKVPPI KDNINEKDMD SLSIEPKSGK EVPDNTIISS AVQDYYVGIP YDESLGKYVP RNERDETILF LTSHLKTLQE ELQRWSDWAN EKVMQATWRL
401: GKDQAELKRM RQEKEDAKNV HQENNMLKET TMRRIMEMEQ ALVNTNSMGD TINSLLNTLE MDNVGLKKDL EAIMLSTGKH ALNVNNSFAK EQEALKKCQA
501: ADMEKRSFEE DLSAIKQEKT SMQQQQEKAN KVLHQYKDLF KHEESVKQRF QRQADCLKNE REQLRDKGKL QRHNFREKVE RNKQKYKEEI QKCESEISQL
601: RFQSERSITE ALKRGIPQLT KGLSTYAESS DSNVVKMERE CVMCMHEHIS VVFLPCAHQV LCKDCNVLLQ KKGMDECPSC RTPIKERISV HFPDSE

Best Arabidopsis Sequence Match ( AT1G03365.1 )
(BLAST)

001: MSIVQKQEEM NGCGLNVDKV EAFTVSPQEK GRKNKRKLAD PSQPNASSLT EFPPYELPSL KPQNHLSGNG SVGEVSNQLQ VEVSESVEWD DPFACHLEEL
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG

Arabidopsis Description

RF4Putative E3 ubiquitin-protein ligase RF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.