Factsheet for Zm00001d005154_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88874	Sorghum	nucleus	79.8	79.49
Solyc09g074160.1.1	Tomato	cytosol	3.05	40.0
Solyc10g050590.1.1	Tomato	cytosol	2.29	35.29
Solyc08g016350.1.1	Tomato	extracellular	3.05	33.33
PGSC0003DMT400009741	Potato	nucleus	3.81	26.32
Bra033393.1-P	Field mustard	nucleus	8.51	24.91
CDX91265	Canola	cytosol, mitochondrion, nucleus	7.88	23.66
CDY22093	Canola	nucleus	13.09	23.3
Bra036227.1-P	Field mustard	plastid	18.68	20.82
Zm00001d006317_P002	Maize	plastid	21.86	20.09
KRH20958	Soybean	nucleus, plastid	22.49	20.05
VIT_05s0020g02320.t01	Wine grape	nucleus	22.62	20.0
KRH02160	Soybean	nucleus	22.24	19.95
Solyc01g080430.2.1	Tomato	nucleus	21.22	19.49
KRH50955	Soybean	nucleus	21.98	19.44
KRH11313	Soybean	nucleus, plastid	21.73	19.32
AT1G03365.2	Thale cress	nucleus	20.2	19.32
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	2.92	19.17
PGSC0003DMT400081760	Potato	plastid	21.86	19.09
Zm00001d020292_P001	Maize	mitochondrion, nucleus	15.5	19.03
Solyc10g050610.1.1	Tomato	nucleus	7.62	18.87
AT4G03000.2	Thale cress	nucleus	19.31	18.67
PGSC0003DMT400074463	Potato	cytosol	10.29	18.49
CDX89896	Canola	nucleus	19.19	18.02
CDY21932	Canola	nucleus, plastid	18.42	17.64
Solyc09g074120.1.1	Tomato	nucleus	12.2	17.58
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	18.3	17.27
Solyc09g074140.1.1	Tomato	nucleus	11.94	17.25
Solyc06g008900.2.1	Tomato	nucleus	17.53	16.39
Solyc09g074190.1.1	Tomato	nucleus	16.26	15.94
PGSC0003DMT400009742	Potato	nucleus	16.26	15.8
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	13.72	15.52
Solyc09g074200.1.1	Tomato	nucleus	15.88	15.49
CDY18168	Canola	nucleus	10.04	15.28
Zm00001d021404_P001	Maize	cytosol	21.35	14.85
Solyc09g074170.1.1	Tomato	cytosol	5.84	14.38
Solyc09g074150.1.1	Tomato	nucleus	6.61	12.78
Os05t0141400-01	Rice	plastid	3.18	11.16

Protein Annotations

EntrezGene:103647191	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1R3NI01	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONM20452.1	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000221726B
EnsemblPlantsGene:Zm00001d005154	EnsemblPlants:Zm00001d005154_P001	EnsemblPlants:Zm00001d005154_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Putative E3 ubiquitin-protein ligase RF4

Coordinates

chr2:+:161423330..161427064

Molecular Weight (calculated)

88212.6 Da

IEP (calculated)

6.633

GRAVY (calculated)

-0.488

Length

787 amino acids

Sequence
(BLAST)

001: MGAAGNVSNP YCSHVREGAD KSSDPRLGPD FTAAEVQADP VNGDLSLSHV KLEQSWSSVQ AFIAEHVTLK DIDLDWSKEV VGLDGFRYVG CNDLKDVALN
101: SLHTFFKTAV DMLSCEGNTE DAVVNAVVHS ALCYQFDGPI TKIAEHARTL LQSGNHLVDH SYSENVDTVL HMLGLYFLCN ASRLLKKYCP FFTLGDALWC
201: ILLCDMDISI ARAAFFPMSG YGNGQSEGYA HSQSDLCEDH DIVNELSEEY SCSATESPAQ FEPPEYEAVQ MMWSNFLTNY IVSFQKFERK NQDAPFAQDE
301: NSPSVPRSVN KKETKGNRSK TNSMKSQKDS GKGLVVFKNI PQVKGIISRT SLRMIKENKT LTAFLASAQS TLAGTSEVAS EKDSQTPMLV PTKPHPGPFS
401: VKKRYSPAVV SIGSLSSPSC SSNSSSSAKG KAEPRQWMEP DVVHFSLPNT PAEGFEFHFS REGLQTTWIP KDRKEELALK LVQRLGELKL EVQVWTDWAN
501: ERVMQSTNRL VNERTVLLSL KKDKADFEEP DVFTRKKLEE TKRAIDSTSC ELDRVNSLVQ ELTDKVSLCR REKKAVQRQG EQYDASLASI LSKKTVSMNR
601: LKSMETEKIL LQEEIAAERS KLSKLLQSLE QARRHEVGLK KRCQEGEKMI DALTKKVNFE RTELERIETS GRARSSCLLL EARNHQEWLQ TNIKNLRQQV
701: GEMSSRSKPL SVANFMRHPG FVIDDSVQRE QECAMCLEEE VSVVFLPCRH QIICAGCNQR HGDGGMTECP SCRSPIERRI CARFTDS

Best Arabidopsis Sequence Match ( AT1G03365.1 )
(BLAST)

001: MSIVQKQEEM NGCGLNVDKV EAFTVSPQEK GRKNKRKLAD PSQPNASSLT EFPPYELPSL KPQNHLSGNG SVGEVSNQLQ VEVSESVEWD DPFACHLEEL
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG

Arabidopsis Description

RF4Putative E3 ubiquitin-protein ligase RF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.