Factsheet for Bra036227.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22093	Canola	nucleus	58.78	93.89
Bra033393.1-P	Field mustard	nucleus	24.93	65.43
AT4G03000.2	Thale cress	nucleus	67.42	58.48
Solyc09g074160.1.1	Tomato	cytosol	4.67	55.0
Solyc10g050590.1.1	Tomato	cytosol	3.97	54.9
Solyc08g016350.1.1	Tomato	extracellular	4.82	47.22
PGSC0003DMT400009741	Potato	nucleus	7.08	43.86
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	6.8	40.0
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	40.23	34.05
GSMUA_Achr3P23730_001	Banana	nucleus	32.44	31.72
Solyc09g074140.1.1	Tomato	nucleus	24.22	31.38
Solyc06g008900.2.1	Tomato	nucleus	36.97	31.0
Solyc09g074120.1.1	Tomato	nucleus	23.94	30.95
GSMUA_Achr3P09160_001	Banana	nucleus	31.87	30.65
Solyc10g050610.1.1	Tomato	nucleus	13.6	30.19
Bra005352.1-P	Field mustard	nucleus	13.03	29.87
PGSC0003DMT400074463	Potato	cytosol	18.41	29.68
GSMUA_Achr2P01510_001	Banana	nucleus	33.43	29.24
PGSC0003DMT400009742	Potato	nucleus	32.72	28.52
Solyc09g074150.1.1	Tomato	nucleus	16.43	28.5
Solyc09g074200.1.1	Tomato	nucleus	32.44	28.38
Solyc09g074190.1.1	Tomato	nucleus	31.16	27.4
Solyc09g074170.1.1	Tomato	cytosol	12.04	26.56
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	25.07	25.43
EER99333	Sorghum	nucleus, plastid	29.46	24.53
Os05t0141500-01	Rice	nucleus, plastid	29.46	23.96
TraesCS1A01G084200.1	Wheat	cytosol	29.46	23.94
TraesCS1B01G101700.1	Wheat	cytosol	29.46	23.91
Zm00001d006317_P002	Maize	plastid	28.75	23.71
TraesCS1D01G085400.1	Wheat	cytosol	29.18	23.68
HORVU1Hr1G018310.1	Barley	cytosol	29.04	23.54
Bra023274.1-P	Field mustard	nucleus	22.8	23.44
OQU88874	Sorghum	nucleus	22.38	20.0
Zm00001d005154_P001	Maize	nucleus	20.82	18.68
Zm00001d021404_P001	Maize	cytosol	29.46	18.39
Os05t0141400-01	Rice	plastid	5.38	16.96

Protein Annotations

EnsemblPlants:Bra036227.1	EnsemblPlants:Bra036227.1-P	EnsemblPlantsGene:Bra036227	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	PFAM:PF13920
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0002541EA8	UniProt:M4F571	MapMan:35.1

Description

AT1G03370 (E=2e-118) | protein binding / zinc ion binding

Coordinates

chrA09:-:4156..6636

Molecular Weight (calculated)

79344.2 Da

IEP (calculated)

9.277

GRAVY (calculated)

-0.608

Length

706 amino acids

Sequence
(BLAST)

001: MNECVVVASL NGSNKVGVSP PPQPQVKGRK NKRKLADSPQ PLTDSSLTEF PPYELVHSLK FQTPLSEESE SLGWDDPFAC YLEELLTSNL MALFRNAMDQ
101: IVACGYREDV VLKAISGSRL YCGGNDLVSN IVNDTLSFLK SGKKVSGLRD YLFEDLQQLV AYTLVEKISL VKEVRPSVST VEAMWRLLMC DLNVFQAFEM
201: EGDGIVECNP TKYSEPVVKF GNFKNCNGSS SGEVAKRKTL ASSSSVAASS VVSGRKGRTK KEVAMMRQKS CVDKIRTYSK GSGYKTAKYA SVGGFLVEKR
301: GKSPSKIASE TVKDPPALDG SGYVTAIPAV NAPPALLPSG SEPALDYYTG IPYDASLGIY VPRNKRDELV LKLAPRMKDL ETELQVWTDW ANQKVKQATS
401: RLLKDQPELK ALRKEKEEAE EVRKERQLLE ESNTKRRSEM EFALSNMTRQ LEKANNAVRR LEMEQSLLRK EREAANLRAV EAAVNYKEAK ERVQRTLKSS
501: QSWEGQKVLL QEEVKSQRDK VAELQQEVAK AKNRQNQIEA TWKQEKAAKE KLAAQATALK EERVKLEELG KAEEERIKTK AENDVRYYTE NIKRLESEIS
601: KLKLKSDCLK IAALKKGIDG SNEMTRTTTT KASLIWENNH RTEGKIKRER ECVMCLSEEM SVIFLPCAHQ VLCSKCNQLH EKEAMDDCPS CRAKIQRRIQ
701: ARFARG

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.