Factsheet for Solyc09g074190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074160.1.1	Tomato	cytosol	5.35	71.67
PGSC0003DMT400009742	Potato	nucleus	71.36	70.74
Solyc09g074200.1.1	Tomato	nucleus	69.36	69.02
Solyc08g016350.1.1	Tomato	extracellular	6.1	68.06
Solyc10g050590.1.1	Tomato	cytosol	4.23	66.67
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	9.22	61.67
Solyc10g050610.1.1	Tomato	nucleus	22.54	56.92
Solyc09g074140.1.1	Tomato	nucleus	37.48	55.23
Solyc09g074150.1.1	Tomato	nucleus	26.15	51.6
Solyc09g074120.1.1	Tomato	nucleus	33.37	49.08
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	40.35	46.55
Solyc06g008900.2.1	Tomato	nucleus	43.21	41.21
Solyc09g074170.1.1	Tomato	cytosol	15.94	40.0
CDY22093	Canola	nucleus	18.68	33.94
Bra033393.1-P	Field mustard	nucleus	10.96	32.71
CDX91265	Canola	cytosol, mitochondrion, nucleus	10.34	31.68
Bra036227.1-P	Field mustard	plastid	27.4	31.16
GSMUA_Achr3P23730_001	Banana	nucleus	24.53	27.29
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	28.02	26.98
AT4G03000.2	Thale cress	nucleus	27.27	26.9
GSMUA_Achr2P01510_001	Banana	nucleus	26.77	26.64
GSMUA_Achr3P09160_001	Banana	nucleus	24.03	26.29
AT1G03365.2	Thale cress	nucleus	26.77	26.12
CDX89896	Canola	nucleus	27.15	26.01
Solyc01g080430.2.1	Tomato	nucleus	27.52	25.79
CDY21932	Canola	nucleus, plastid	26.28	25.67
Solyc08g077100.2.1	Tomato	nucleus	12.08	22.93
Solyc08g006980.2.1	Tomato	nucleus	20.05	22.24
CDY18168	Canola	nucleus	13.57	21.08
TraesCS1B01G101700.1	Wheat	cytosol	22.17	20.46
TraesCS1A01G084200.1	Wheat	cytosol	22.04	20.37
TraesCS1D01G085400.1	Wheat	cytosol	21.92	20.23
Zm00001d006317_P002	Maize	plastid	21.42	20.09
HORVU1Hr1G018310.1	Barley	cytosol	21.79	20.09
EER99333	Sorghum	nucleus, plastid	21.17	20.05
Os05t0141500-01	Rice	nucleus, plastid	21.67	20.05
OQU88874	Sorghum	nucleus	16.69	16.96
Zm00001d005154_P001	Maize	nucleus	15.94	16.26
Os05t0141400-01	Rice	plastid	4.23	15.18
Zm00001d021404_P001	Maize	cytosol	21.17	15.03

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4CUZ6	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF164	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc09g074190.1	EnsemblPlants:Solyc09g074190.1.1
UniParc:UPI000276B379	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:65952207..65954847

Molecular Weight (calculated)

91477.2 Da

IEP (calculated)

7.704

GRAVY (calculated)

-0.640

Length

803 amino acids

Sequence
(BLAST)

001: MIDDNINDDV NEKSLVVLDK EKGSMNKRKS ASELPLETLT NSPVSCLTQF HKYKLLDEAP ERDTIVEINP LKGGCPQSDA KQKGEMPPDT DWENMITTLL
101: LELLTHNLST IFQIAVKRIV KYGYSEEIAE WVIMRSGFYH GRKDTVSNVV DGALAVLSRE NVFDISKSIV FEDLPSLVNY TLLKMVCVLR QIKTYFPVVE
201: ALWWLLIFDL NPMHALTMKG NHLVELRSQE SLGDSSFSLN LPRSKTEASN NTQSNSDKQQ LSPNSQTWQS KFPIASETLQ EHESKNSNVC QAEKGKGSFL
301: PCSEAKSKGP VLEDKSGTGK NSLNSKKDLC RRNTFQFEKN FRSRTSKNIK VNMNACESLV LDKNVNLSFT RATKKNSRSK ASTCFKNNHP LEKASYDSPC
401: HSSSITPTSD TSKLQPMQAN VNDKDLDSLV VEPTSSKKVL DNTTISSTLL DYYVGIPYDE SLGKYVPQNE RDEIILLRTS HLKSLQKELQ WWSDWANEKV
501: MQATWRLAQD QAELKMLRQE KEDAEKVHQE KQMLEKGTMA RIMEMEQAQV NTKSMSETLN SLLKTLEMDN VGLKKDIEAL MLSTSENAVN QNNALAKEQE
601: AIKKCQVADM EKHSFEKDLS TFKQEKASLL QQQEKTNKVV DQFKVLLKQE ERMKQRLLRQ ADSLKAEKEQ LCVHGKVQRD NFRERVKINM QKYKQDIQKC
701: ESEISQLRFQ SERSKIEALK RGIPQMTNGL AAFAESSGSN VLNVERECVM CMNEQITIVF LPCAHQVLCE DCNVFHQKKG MDKCPSCRTS IKERISVRFP
801: DSE

Best Arabidopsis Sequence Match ( AT1G03365.2 )
(BLAST)

001: MSIVQKQEEM NGCGLNVDKV EAFTVSPQEK GRKNKRKLAD PSQPNASSLT EFPPYELPSL KPQNHLSGNG SVGEVSNQLQ VEVSESVEWD DPFACHLEEL
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG

Arabidopsis Description

RF4Putative E3 ubiquitin-protein ligase RF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.