Factsheet for GSMUA_Achr3P09160_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P23730_001	Banana	nucleus	42.1	42.8
GSMUA_Achr2P01510_001	Banana	nucleus	44.28	40.27
Solyc10g050590.1.1	Tomato	cytosol	2.72	39.22
VIT_05s0020g02320.t01	Wine grape	nucleus	45.1	37.19
Solyc09g074160.1.1	Tomato	cytosol	3.0	36.67
Bra033393.1-P	Field mustard	nucleus	13.22	36.06
KRH20958	Soybean	nucleus, plastid	42.92	35.67
CDY22093	Canola	nucleus	21.25	35.29
KRH11313	Soybean	nucleus, plastid	42.51	35.25
KRH02160	Soybean	nucleus	41.96	35.12
KRH50955	Soybean	nucleus	42.1	34.72
Solyc01g080430.2.1	Tomato	nucleus	40.33	34.54
PGSC0003DMT400081760	Potato	plastid	41.96	34.18
CDX91265	Canola	cytosol, mitochondrion, nucleus	12.13	33.97
Bra036227.1-P	Field mustard	plastid	30.65	31.87
PGSC0003DMT400009741	Potato	nucleus	4.77	30.7
Solyc08g016350.1.1	Tomato	extracellular	3.0	30.56
AT4G03000.2	Thale cress	nucleus	31.47	28.38
Solyc06g008900.2.1	Tomato	nucleus	32.43	28.27
Solyc09g074150.1.1	Tomato	nucleus	15.67	28.26
Solyc09g074140.1.1	Tomato	nucleus	20.84	28.07
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	4.5	27.5
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	25.07	27.38
PGSC0003DMT400074463	Potato	cytosol	16.21	27.17
Solyc10g050610.1.1	Tomato	nucleus	11.72	27.04
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	24.8	26.88
AT1G03365.2	Thale cress	nucleus	30.11	26.85
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	29.97	26.38
CDX89896	Canola	nucleus	29.84	26.13
CDY21932	Canola	nucleus, plastid	29.16	26.03
Solyc09g074200.1.1	Tomato	nucleus	27.25	24.78
PGSC0003DMT400009742	Potato	nucleus	26.84	24.32
Solyc09g074190.1.1	Tomato	nucleus	26.29	24.03
Solyc09g074120.1.1	Tomato	nucleus	17.3	23.26
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	21.12	22.27
CDY18168	Canola	nucleus	15.53	22.05
Solyc09g074170.1.1	Tomato	cytosol	9.13	20.94

Protein Annotations

EnsemblPlants:GSMUA_Achr3P09160_001	EnsemblPlants:GSMUA_Achr3T09160_001	EnsemblPlantsGene:GSMUA_Achr3G09160_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	PFAM:PF13920
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI000294D9E5	UniProt:M0SD33	MapMan:35.1

Description

Putative E3 ubiquitin-protein ligase RF298 [Source:GMGC_GENE;Acc:GSMUA_Achr3G09160_001]

Coordinates

chr3:+:6586155..6589641

Molecular Weight (calculated)

81937.0 Da

IEP (calculated)

7.577

GRAVY (calculated)

-0.646

Length

734 amino acids

Sequence
(BLAST)

001: MATMVAASGS LGSSPMSNQE KCSRNKRKFQ TDSPVLDPSD PSLMESAIHE YEPFPTGPLK VLDLEDVKYT DWSGMMETQL EELLLSNLDI AFKSAIKKIT
101: LYGYKESVAI NALLRIGRCY GCKDPVSNIV EHALEYLSSG KAVDISSREN SSEDMRKLQK SLLEDMVNVL RKMRPFYSRG EAMWSLLIHD INLSHACITD
201: GDTFSGSGCN EISRAPAVQS NVEPNTNGTT TSVIVESNVP ESPMKENPPS SSKSAEEEFR SQTVAKPSLT REKLAGSRKG LAGSSRNRYR STHLERNNRG
301: HGHRSASRLS KNSNLGNLLL DKKCKSISDS NFSFTAGSSS SGTDKVSNSA SLLAANTDAS LLLSSNISDD ISTRPNDTAV SKKSSSISSF LCHQAGSNCA
401: ADAKDEILVK LVPRVQELQT QLQDWRDWAQ QKVMQAARRL SKDKVELQIL RQEKEEATRL LKEKETLEVS MMKKVAETEY AWSKACAQYE MSNATMGKLE
501: NDNNKLRQAL EIAKSHATKL AANCQEASMR EIMTLKKIHS WEKEKVMFNE ELAAEKNKLS RLRHQLEEAK DCHDQSEAAW KQEEKAKEES LMQGAAQKNE
601: RENIEASAKL EEDAFILKTE IGLQRYKDDI RTLENQIAKL RLKSCTKIPV LSWDTSVHSN TDMGDSQGSG NGDIRRDREC VMCLTEEMSV VFLPCSHQVV
701: CAKCNELHEK QGMKDCPSCR TPIRRRIYVR SAYS

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.