CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074160.1.1	Tomato	cytosol	12.6	55.0
Solyc10g050590.1.1	Tomato	cytosol	10.69	54.9
CDY22093	Canola	nucleus	77.86	46.15
PGSC0003DMT400009741	Potato	nucleus	19.85	45.61
Solyc08g016350.1.1	Tomato	extracellular	11.45	41.67
AT4G03000.2	Thale cress	nucleus	78.63	25.31
CDY21932	Canola	nucleus, plastid	78.24	24.94
CDX89896	Canola	nucleus	61.83	19.33
Solyc09g074140.1.1	Tomato	nucleus	33.97	16.33
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	46.18	14.51
Solyc09g074120.1.1	Tomato	nucleus	29.77	14.29
GSMUA_Achr3P23730_001	Banana	nucleus	37.02	13.43
CDY31680	Canola	mitochondrion, nucleus	28.24	13.05
GSMUA_Achr2P01510_001	Banana	nucleus	39.31	12.76
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	32.44	12.21
CDX84219	Canola	mitochondrion, nucleus	27.48	12.16
GSMUA_Achr3P09160_001	Banana	nucleus	33.97	12.13
Solyc06g008900.2.1	Tomato	nucleus	38.17	11.88
EER99333	Sorghum	nucleus, plastid	36.64	11.32
TraesCS1A01G084200.1	Wheat	cytosol	36.26	10.93
TraesCS1B01G101700.1	Wheat	cytosol	36.26	10.92
Zm00001d006317_P002	Maize	plastid	35.5	10.86
Os05t0141500-01	Rice	nucleus, plastid	35.88	10.83
TraesCS1D01G085400.1	Wheat	cytosol	35.88	10.8
HORVU1Hr1G018310.1	Barley	cytosol	35.88	10.79
PGSC0003DMT400009742	Potato	nucleus	33.21	10.74
Solyc09g074150.1.1	Tomato	nucleus	16.41	10.57
Solyc09g074190.1.1	Tomato	nucleus	31.68	10.34
CDY01268	Canola	cytosol	27.1	10.33
CDX93827	Canola	cytosol	26.72	10.19
Solyc09g074200.1.1	Tomato	nucleus	31.3	10.16
OQU88874	Sorghum	nucleus	25.57	8.48
Zm00001d021404_P001	Maize	cytosol	36.26	8.4
Zm00001d005154_P001	Maize	nucleus	23.66	7.88
Solyc10g050610.1.1	Tomato	nucleus	6.87	5.66
PGSC0003DMT400074463	Potato	cytosol	7.63	4.57
Os05t0141400-01	Rice	plastid	3.05	3.57
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	1.15	2.5
Solyc09g074170.1.1	Tomato	cytosol	1.91	1.56
CDY18168	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDX91265	EnsemblPlantsGene:GSBRNA2T00152497001	Gene3D:3.30.40.10	GO:A0A078DPL4	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	PFAM:PF13920
PFscan:PS50089	ProteinID:CDX91265	ProteinID:CDX91265.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0004EE6E2A
MapMan:35.1	:	:	:	:	:

Description

BnaC02g26760D

Coordinates

chrLK031866:-:842288..843858

Molecular Weight (calculated)

29894.9 Da

IEP (calculated)

9.972

GRAVY (calculated)

-0.832

Length

262 amino acids

Sequence
(BLAST)

001: MEFALNNMTR QVEKANNAVR RLELEHSLLK KEREAASIRA AESAESCIKA KERVKRALKS TQSWDWQKVL LQEELKSQRD KVAELQQEVV KAKNRHNQIE
101: ATWKQEKAAK EKLEELGKAE EERIKTKAEN DVKYYTENIK RLESEISKLK LKSNGLKIAA LKKGMDGSND GNKSGMTHAT TTFTKTNQMA AAANAWANSA
201: KIKRERECVM CLSEEMSVIF LPCAHQVLCS KCNQLHEKEA MDDCPSCRAK IQRRIQARFA RG

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.