Factsheet for AT4G03000.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91265	Canola	cytosol, mitochondrion, nucleus	25.31	78.63
CDY22093	Canola	nucleus	37.96	69.91
Bra036227.1-P	Field mustard	plastid	58.48	67.42
CDY21932	Canola	nucleus, plastid	56.63	56.08
Solyc10g050590.1.1	Tomato	cytosol	3.44	54.9
AT1G03365.2	Thale cress	nucleus	54.67	54.07
Solyc09g074160.1.1	Tomato	cytosol	3.93	53.33
Solyc08g016350.1.1	Tomato	extracellular	4.05	45.83
PGSC0003DMT400009741	Potato	nucleus	5.77	41.23
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	5.41	36.67
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	35.38	34.53
Solyc06g008900.2.1	Tomato	nucleus	33.29	32.19
GSMUA_Achr3P09160_001	Banana	nucleus	28.38	31.47
Solyc10g050610.1.1	Tomato	nucleus	12.29	31.45
GSMUA_Achr3P23730_001	Banana	nucleus	27.89	31.44
Solyc09g074140.1.1	Tomato	nucleus	21.01	31.38
GSMUA_Achr2P01510_001	Banana	nucleus	30.59	30.86
PGSC0003DMT400074463	Potato	cytosol	16.09	29.91
PGSC0003DMT400009742	Potato	nucleus	28.5	28.64
Solyc09g074200.1.1	Tomato	nucleus	28.26	28.5
Solyc09g074120.1.1	Tomato	nucleus	19.04	28.39
Solyc09g074150.1.1	Tomato	nucleus	13.76	27.52
Solyc09g074190.1.1	Tomato	nucleus	26.9	27.27
Solyc09g074170.1.1	Tomato	cytosol	10.07	25.62
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	21.87	25.57
EER99333	Sorghum	nucleus, plastid	26.17	25.12
TraesCS1A01G084200.1	Wheat	cytosol	26.78	25.09
TraesCS1B01G101700.1	Wheat	cytosol	26.41	24.71
TraesCS1D01G085400.1	Wheat	cytosol	26.17	24.48
HORVU1Hr1G018310.1	Barley	cytosol	26.17	24.45
Zm00001d006317_P002	Maize	plastid	25.68	24.42
Os05t0141500-01	Rice	nucleus, plastid	25.8	24.19
AT2G35330.1	Thale cress	endoplasmic reticulum	21.87	24.12
AT1G32530.1	Thale cress	cytosol	20.88	23.91
OQU88874	Sorghum	nucleus	19.41	20.0
Zm00001d005154_P001	Maize	nucleus	18.67	19.31
Zm00001d021404_P001	Maize	cytosol	26.04	18.74
Os05t0141400-01	Rice	plastid	4.18	15.18

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:828112	UniProt:A0A178UWK0	ProteinID:AAC79106.1	ProteinID:AEE82258.1
ProteinID:AEE82259.1	EMBL:AK226608	EMBL:AK229071	ArrayExpress:AT4G03000	EnsemblPlantsGene:AT4G03000	RefSeq:AT4G03000
TAIR:AT4G03000	RefSeq:AT4G03000-TAIR-G	EnsemblPlants:AT4G03000.2	TAIR:AT4G03000.2	Unigene:At.34240	ProteinID:CAB77785.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	RefSeq:NP_192209.2	RefSeq:NP_974504.1
ProteinID:OAO97081.1	PFAM:PF13920	PO:PO:0000293	PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141
UniProt:Q0WPJ7	SUPFAM:SSF57850	UniParc:UPI000034F0E4	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]

Coordinates

chr4:+:1324136..1327520

Molecular Weight (calculated)

90163.6 Da

IEP (calculated)

9.066

GRAVY (calculated)

-0.755

Length

814 amino acids

Sequence
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.