Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- endoplasmic reticulum 5
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005352.1-P | Field mustard | nucleus | 32.93 | 78.9 |
| CDX84219 | Canola | mitochondrion, nucleus | 61.65 | 76.86 |
| CDY31680 | Canola | mitochondrion, nucleus | 56.64 | 73.72 |
| AT1G32530.1 | Thale cress | cytosol | 60.7 | 63.01 |
| KRH58212 | Soybean | nucleus | 55.69 | 57.32 |
| KRH04325 | Soybean | nucleus | 52.3 | 56.85 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 55.28 | 56.43 |
| PGSC0003DMT400052886 | Potato | nucleus | 47.97 | 48.96 |
| Solyc08g006980.2.1 | Tomato | nucleus | 46.75 | 47.65 |
| KRH28281 | Soybean | nucleus, plastid | 43.09 | 46.97 |
| GSMUA_Achr1P24020_001 | Banana | mitochondrion, nucleus | 40.51 | 44.49 |
| GSMUA_Achr7P04700_001 | Banana | mitochondrion, nucleus | 39.43 | 42.98 |
| Solyc08g077100.2.1 | Tomato | nucleus | 23.31 | 40.66 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 31.44 | 35.2 |
| TraesCS5D01G202000.1 | Wheat | mitochondrion | 31.17 | 34.9 |
| TraesCS5B01G194700.1 | Wheat | mitochondrion | 31.03 | 34.75 |
| KXG35515 | Sorghum | mitochondrion | 29.95 | 34.32 |
| Os09t0371700-01 | Rice | nucleus | 9.89 | 34.27 |
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 29.27 | 33.7 |
| HORVU5Hr1G058760.1 | Barley | plastid | 30.62 | 31.17 |
| OQU93157 | Sorghum | plastid | 8.67 | 29.22 |
| AT1G03365.2 | Thale cress | nucleus | 24.39 | 21.87 |
| AT4G03000.2 | Thale cress | nucleus | 24.12 | 21.87 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:818100 | ProteinID:AEC09094.1 | ProteinID:AEC09095.1 | ArrayExpress:AT2G35330 |
| EnsemblPlantsGene:AT2G35330 | RefSeq:AT2G35330 | TAIR:AT2G35330 | RefSeq:AT2G35330-TAIR-G | EnsemblPlants:AT2G35330.1 | TAIR:AT2G35330.1 |
| EMBL:AY136366 | Unigene:At.24931 | EMBL:BT000182 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001189683.1 |
| RefSeq:NP_181076.3 | PFAM:PF13920 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020094 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR10044 |
| PANTHER:PTHR10044:SF133 | UniProt:Q8L7B1 | SUPFAM:SSF57850 | UniParc:UPI00000AC056 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
Coordinates
chr2:+:14868861..14871994
Molecular Weight (calculated)
82483.8 Da
IEP (calculated)
6.732
GRAVY (calculated)
-0.593
Length
738 amino acids
Sequence
(BLAST)
(BLAST)
001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.