Factsheet for PGSC0003DMT400052886

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000930
PGSC0003DMT400033753
PGSC0003DMT400052886

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32530.1	PGSC0003DMT400033753	AT1G13330.1	19187040
AT1G32530.1	PGSC0003DMT400052886	AT1G32530.1	19187040
AT1G32530.1	PGSC0003DMT400000930	AT4G29170.1	19187040

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006980.2.1	Tomato	nucleus	83.96	83.84
VIT_02s0012g01020.t01	Wine grape	nucleus	54.63	54.63
KRH04325	Soybean	nucleus	51.18	54.49
KRH58212	Soybean	nucleus	53.67	54.11
Bra005352.1-P	Field mustard	nucleus	22.27	52.27
CDX84219	Canola	mitochondrion, nucleus	42.05	51.35
CDY31680	Canola	mitochondrion, nucleus	38.73	49.38
Bra023274.1-P	Field mustard	nucleus	46.06	48.47
CDX93827	Canola	cytosol	45.92	48.33
AT2G35330.1	Thale cress	endoplasmic reticulum	48.96	47.97
CDY01268	Canola	cytosol	44.67	47.02
AT1G32530.1	Thale cress	cytosol	46.2	46.98
KRH28281	Soybean	nucleus, plastid	42.46	45.35
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	39.97	43.01
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	37.9	40.47
Os09t0371700-01	Rice	nucleus	11.34	38.5
TraesCS5D01G202000.1	Wheat	mitochondrion	33.33	36.57
TraesCS5B01G194700.1	Wheat	mitochondrion	33.06	36.27
TraesCS5A01G189000.1	Wheat	mitochondrion	32.5	35.66
KXG35515	Sorghum	mitochondrion	31.26	35.09
Zm00001d020292_P001	Maize	mitochondrion, nucleus	30.98	34.95
PGSC0003DMT400009741	Potato	nucleus	5.39	34.21
HORVU5Hr1G058760.1	Barley	plastid	32.5	32.41
OQU93157	Sorghum	plastid	8.44	27.85
PGSC0003DMT400081760	Potato	plastid	29.6	23.75
PGSC0003DMT400009742	Potato	nucleus	24.07	21.48
PGSC0003DMT400074463	Potato	cytosol	12.59	20.78

Protein Annotations

EnsemblPlants:PGSC0003DMT400052886	EnsemblPlantsGene:PGSC0003DMG400020519	EntrezGene:102600104	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF133	PFAM:PF13920
PFscan:PS50089	PGSC:PGSC0003DMG400020519	RefSeq:XP_006362500.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0002954FFA
UniProt:M1BU38	MapMan:35.1	:	:	:	:

Description

Synaptonemal complex protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020519]

Coordinates

chr8:-:1262441..1267001

Molecular Weight (calculated)

80068.4 Da

IEP (calculated)

6.670

GRAVY (calculated)

-0.687

Length

723 amino acids

Sequence
(BLAST)

001: MSSKEKYIRN NRRLRSARID HDFNTHISSK SNSLDFSGIS ESGVRQLNPE SEIAQQSNPI NVGSDGDSGS GSGIDESGLN CCTEDQLEDI LLQNLEVLYS
101: EAVTKLMDLG YDEEVAMRAI LKNGHCYGGM DVLTNILHNS LSYLNNGYVN SGSSSSGDES DQPFVDLRQL EEYSLAGMIC LLQQMKPHLS KVDAMWCLLV
201: SDLHVGRASV MEIPDGSGRI NGSVGGGSSS SSTNVEGVAT GPIGVVPAMC RFHGGWGFGN STGNAYPLNK SFAITSDSSS QKDIDCPKRF NLTPSMKTLL
301: KRNVAAFTAG FRSNPKYMQR QSRVSSSSLA DGDQSSGLAQ SGGSQTSKSQ DVVNCVVGKF QDLNLDENTQ QQGKGNEDLD QKDEMLLSLL DQIKDLEKQV
401: KERKDWAHQK AMQAARKLSH DLTELKMLRM EKEDIQRMKK GKPAIEDATM KKLSEMETSL RTASANVDRS NMFVKTLQEE NAEMKAELEA SKLSASESAK
501: KCAEAAKREK KCLKKLGVWD KQKKKLQEEI AAEKQKISDL QNQLAQSEVA IKDAEVNWRQ EQKARQQASA LVDEERRFKE AAEANNKRKL EELRSKAEID
601: FQRHKDDLQR LEQDLSRLRA STELQNQSAN VVTGSNAEQH PHGDIARMLH ELANSEENSP VKDDSRECIM CMKHEVSVVF LPCAHQVLCS NCNDNFGKKG
701: RVAKCPCCRA PIERRIRVFG ATS

Best Arabidopsis Sequence Match ( AT2G35330.1 )
(BLAST)

001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.