Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g074160.1.1 | Tomato | cytosol | 42.98 | 81.67 |
| Solyc10g050590.1.1 | Tomato | cytosol | 31.58 | 70.59 |
| Solyc08g016350.1.1 | Tomato | extracellular | 37.72 | 59.72 |
| CDX91265 | Canola | cytosol, mitochondrion, nucleus | 45.61 | 19.85 |
| Bra033393.1-P | Field mustard | nucleus | 43.86 | 18.59 |
| Solyc09g074140.1.1 | Tomato | nucleus | 85.96 | 17.98 |
| Solyc09g074120.1.1 | Tomato | nucleus | 79.82 | 16.67 |
| Solyc09g074130.1.1 | Tomato | endoplasmic reticulum | 85.96 | 14.08 |
| PGSC0003DMT400009742 | Potato | nucleus | 87.72 | 12.35 |
| CDY22093 | Canola | nucleus | 43.86 | 11.31 |
| Bra036227.1-P | Field mustard | plastid | 43.86 | 7.08 |
| AT1G03365.2 | Thale cress | nucleus | 44.74 | 6.2 |
| CDY21932 | Canola | nucleus, plastid | 43.86 | 6.08 |
| KRH71485 | Soybean | cytosol, endoplasmic reticulum, nucleus | 43.86 | 6.0 |
| CDX89896 | Canola | nucleus | 43.86 | 5.97 |
| Solyc09g074150.1.1 | Tomato | nucleus | 21.05 | 5.9 |
| AT4G03000.2 | Thale cress | nucleus | 41.23 | 5.77 |
| GSMUA_Achr2P01510_001 | Banana | nucleus | 38.6 | 5.45 |
| GSMUA_Achr3P23730_001 | Banana | nucleus | 34.21 | 5.4 |
| PGSC0003DMT400052886 | Potato | nucleus | 34.21 | 5.39 |
| PGSC0003DMT400081760 | Potato | plastid | 42.11 | 5.33 |
| TraesCS1A01G084200.1 | Wheat | cytosol | 39.47 | 5.18 |
| TraesCS1D01G085400.1 | Wheat | cytosol | 39.47 | 5.17 |
| TraesCS1B01G101700.1 | Wheat | cytosol | 39.47 | 5.17 |
| HORVU1Hr1G018310.1 | Barley | cytosol | 37.72 | 4.94 |
| Os05t0141500-01 | Rice | nucleus, plastid | 36.84 | 4.84 |
| GSMUA_Achr3P09160_001 | Banana | nucleus | 30.7 | 4.77 |
| EER99333 | Sorghum | nucleus, plastid | 35.09 | 4.72 |
| Zm00001d006317_P002 | Maize | plastid | 33.33 | 4.44 |
| OQU88874 | Sorghum | nucleus | 28.07 | 4.05 |
| Zm00001d005154_P001 | Maize | nucleus | 26.32 | 3.81 |
| Zm00001d021404_P001 | Maize | cytosol | 35.09 | 3.54 |
| Os05t0141400-01 | Rice | plastid | 5.26 | 2.68 |
| Solyc09g074170.1.1 | Tomato | cytosol | 4.39 | 1.56 |
| PGSC0003DMT400074463 | Potato | cytosol | 1.75 | 0.46 |
| CDY18168 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400009741 | EnsemblPlantsGene:PGSC0003DMG400003810 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF164 | PFAM:PF13920 | PFscan:PS50089 |
| PGSC:PGSC0003DMG400003810 | SUPFAM:SSF57850 | UniParc:UPI000296E2CE | UniProt:M0ZWV4 | MapMan:35.1 | : |
Description
Nutrient reservoir [Source:PGSC_GENE;Acc:PGSC0003DMG400003810]
Coordinates
chr9:+:51296441..51297052
Molecular Weight (calculated)
13102.8 Da
IEP (calculated)
5.694
GRAVY (calculated)
-0.521
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MQKYKEEIQK CESEISQLRF QYEKSKIEAL KQGIPQLTKG LAAYAESSDS NVVKMERECV MCMNEQISVV FLPCAHQVLC EDCNVLHQKK GMDECPSCRT
101: PIKERISVHF PDSE
101: PIKERISVHF PDSE
001: MSIVQKQEEM NGCGLNVDKV EAFTVSPQEK GRKNKRKLAD PSQPNASSLT EFPPYELPSL KPQNHLSGNG SVGEVSNQLQ VEVSESVEWD DPFACHLEEL
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG
Arabidopsis Description
RF4Putative E3 ubiquitin-protein ligase RF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVT8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.