Factsheet for Solyc09g074140.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074160.1.1	Tomato	cytosol	9.91	90.0
PGSC0003DMT400009741	Potato	nucleus	17.98	85.96
Solyc10g050590.1.1	Tomato	cytosol	6.97	74.51
Solyc08g016350.1.1	Tomato	extracellular	8.81	66.67
Solyc09g074150.1.1	Tomato	nucleus	45.14	60.44
Solyc09g074120.1.1	Tomato	nucleus	59.63	59.52
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	64.59	50.57
Solyc09g074190.1.1	Tomato	nucleus	55.23	37.48
Solyc09g074200.1.1	Tomato	nucleus	54.5	36.8
Bra033393.1-P	Field mustard	nucleus	17.25	34.94
CDY22093	Canola	nucleus	27.71	34.16
CDX91265	Canola	cytosol, mitochondrion, nucleus	16.33	33.97
Solyc09g074170.1.1	Tomato	cytosol	19.45	33.12
Solyc10g050610.1.1	Tomato	nucleus	16.88	28.93
Solyc06g008900.2.1	Tomato	nucleus	40.37	26.13
Bra036227.1-P	Field mustard	plastid	31.38	24.22
GSMUA_Achr3P23730_001	Banana	nucleus	28.26	21.33
AT4G03000.2	Thale cress	nucleus	31.38	21.01
GSMUA_Achr3P09160_001	Banana	nucleus	28.07	20.84
AT1G03365.2	Thale cress	nucleus	30.83	20.41
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	31.19	20.38
CDY21932	Canola	nucleus, plastid	29.72	19.71
GSMUA_Achr2P01510_001	Banana	nucleus	29.17	19.7
Solyc08g077100.2.1	Tomato	nucleus	15.23	19.62
CDX89896	Canola	nucleus	29.91	19.45
Solyc01g080430.2.1	Tomato	nucleus	29.91	19.02
Solyc08g006980.2.1	Tomato	nucleus	23.3	17.54
HORVU1Hr1G018310.1	Barley	cytosol	27.16	16.99
TraesCS1B01G101700.1	Wheat	cytosol	26.97	16.9
TraesCS1A01G084200.1	Wheat	cytosol	26.79	16.8
TraesCS1D01G085400.1	Wheat	cytosol	26.61	16.67
EER99333	Sorghum	nucleus, plastid	25.32	16.27
Os05t0141500-01	Rice	nucleus, plastid	25.87	16.24
Zm00001d006317_P002	Maize	plastid	25.14	16.0
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	2.94	13.33
OQU88874	Sorghum	nucleus	18.53	12.78
Zm00001d021404_P001	Maize	cytosol	25.14	12.11
Zm00001d005154_P001	Maize	nucleus	17.25	11.94
CDY18168	Canola	nucleus	10.83	11.41
Os05t0141400-01	Rice	plastid	3.3	8.04

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4CUZ1	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF164	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc09g074140.1	EnsemblPlants:Solyc09g074140.1.1
UniParc:UPI000276B197	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:65882692..65884566

Molecular Weight (calculated)

62108.4 Da

IEP (calculated)

5.846

GRAVY (calculated)

-0.842

Length

545 amino acids

Sequence
(BLAST)

001: MVDDNISDDA DEKSLAISDK EKGSRNKRKF ESKIPLGTSS DSHGSSLTEF QKSDLLEKPT KGVTLFEFDP LTSRCPQYDA EQEVETAPNI DSEDMSAYCS
101: FVLDKKLDSS FSGATRKSSH SKMKILVKCN QPLAKESFDS QCLSSPIAPA SDTSKVPPIT DNISEKDLDS LSMEPKSSKK IPANTTISSA VQDYFVGIPY
201: DESLGKYVPR NERDETILFL TSHLKTLQEE LQGWSDWANE KVMQATRRLC KDQAELKRMR QEKEDAENVH QEKNMLEETT MRRIMEMEQA LVNTNSMGET
301: INSLLNTLEM DNVGLKKDLE AVMPSAGKHA MNVNNALAKE QEALKKCQAA DMEKRSFDED LSAIKQEKTS LQQQQEKANK VLHQYKDLFN HEESVKQKFQ
401: QQVDCLKNER EQLRVKGKVQ RHNFREKVER NKQKYKEETQ KCESEISQLR FQSQRSITEA LKRGIPQLTK GLSTYAESSD SNVVKMEREC VMCMHEHISV
501: VFLPCAHQVL CEDCNVLHQK KGMDECPSCR TPIKERISVH FPDSE

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.