Factsheet for Solyc08g016370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

plastid 1
mitochondrion 1
cytosol 2
nucleus 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074170.1.1	Tomato	cytosol	36.67	13.75
Solyc10g050610.1.1	Tomato	nucleus	35.83	13.52
PGSC0003DMT400009742	Potato	nucleus	65.0	9.63
Solyc09g074190.1.1	Tomato	nucleus	61.67	9.22
Solyc09g074200.1.1	Tomato	nucleus	59.17	8.8
CDY18168	Canola	nucleus	37.5	8.7
Solyc06g008900.2.1	Tomato	nucleus	50.0	7.13
Bra036227.1-P	Field mustard	plastid	40.0	6.8
Os05t0141400-01	Rice	plastid	12.5	6.7
CDY21932	Canola	nucleus, plastid	40.0	5.84
CDX89896	Canola	nucleus	39.17	5.61
AT1G03365.2	Thale cress	nucleus	38.33	5.59
Solyc08g016350.1.1	Tomato	extracellular	3.33	5.56
AT4G03000.2	Thale cress	nucleus	36.67	5.41
Solyc01g080430.2.1	Tomato	nucleus	37.5	5.25
GSMUA_Achr2P01510_001	Banana	nucleus	35.0	5.2
GSMUA_Achr3P23730_001	Banana	nucleus	30.83	5.12
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	31.67	4.56
GSMUA_Achr3P09160_001	Banana	nucleus	27.5	4.5
Solyc08g006980.2.1	Tomato	nucleus	25.83	4.28
Solyc09g074120.1.1	Tomato	nucleus	15.83	3.48
OQU88874	Sorghum	nucleus	20.0	3.04
Solyc09g074140.1.1	Tomato	nucleus	13.33	2.94
Zm00001d005154_P001	Maize	nucleus	19.17	2.92
Zm00001d006317_P002	Maize	plastid	20.0	2.8
TraesCS1B01G101700.1	Wheat	cytosol	20.0	2.76
TraesCS1A01G084200.1	Wheat	cytosol	19.17	2.65
TraesCS1D01G085400.1	Wheat	cytosol	19.17	2.64
EER99333	Sorghum	nucleus, plastid	18.33	2.59
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	15.0	2.59
HORVU1Hr1G018310.1	Barley	cytosol	18.33	2.53
CDY22093	Canola	nucleus	8.33	2.26
Os05t0141500-01	Rice	nucleus, plastid	15.83	2.19
Solyc10g050590.1.1	Tomato	cytosol	0.83	1.96
Zm00001d021404_P001	Maize	cytosol	17.5	1.86
Solyc09g074150.1.1	Tomato	nucleus	5.83	1.72
Solyc09g074160.1.1	Tomato	cytosol	0.83	1.67
CDX91265	Canola	cytosol, mitochondrion, nucleus	2.5	1.15
Bra033393.1-P	Field mustard	nucleus	2.5	1.12
Solyc08g077100.2.1	Tomato	nucleus	2.5	0.71

Protein Annotations

MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
UniProt:K4CJG1	PANTHER:PTHR10044	PANTHER:PTHR10044:SF164	EnsemblPlantsGene:Solyc08g016370.1	EnsemblPlants:Solyc08g016370.1.1	UniParc:UPI000276B868

Description

No Description!

Coordinates

chr8:-:7359202..7359564

Molecular Weight (calculated)

13305.2 Da

IEP (calculated)

5.579

GRAVY (calculated)

0.162

Length

120 amino acids

Sequence
(BLAST)

001: MRSGLYHGSK DAVSNVVNGA LALLSRENVF GICKPIVFED LPSLVNYTLL EMVCMLKEVE PGLPVVKALW WLLILDLNPI HACTMEVYHL VASLGDNSYG
101: LNLPQSKTKN FDNTQLNSDK

Best Arabidopsis Sequence Match ( AT1G03365.1 )
(BLAST)

001: MSIVQKQEEM NGCGLNVDKV EAFTVSPQEK GRKNKRKLAD PSQPNASSLT EFPPYELPSL KPQNHLSGNG SVGEVSNQLQ VEVSESVEWD DPFACHLEEL
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG

Arabidopsis Description

RF4Putative E3 ubiquitin-protein ligase RF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.