Factsheet for Solyc09g074120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074160.1.1	Tomato	cytosol	8.97	81.67
PGSC0003DMT400009741	Potato	nucleus	16.67	79.82
Solyc10g050590.1.1	Tomato	cytosol	6.78	72.55
Solyc09g074140.1.1	Tomato	nucleus	59.52	59.63
Solyc08g016350.1.1	Tomato	extracellular	7.69	58.33
Solyc09g074150.1.1	Tomato	nucleus	38.46	51.6
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	58.79	46.12
Solyc09g074190.1.1	Tomato	nucleus	49.08	33.37
Solyc09g074200.1.1	Tomato	nucleus	48.72	32.96
CDY22093	Canola	nucleus	26.56	32.81
Solyc10g050610.1.1	Tomato	nucleus	18.68	32.08
Bra033393.1-P	Field mustard	nucleus	15.75	31.97
CDX91265	Canola	cytosol, mitochondrion, nucleus	14.29	29.77
Solyc09g074170.1.1	Tomato	cytosol	15.38	26.25
Bra036227.1-P	Field mustard	plastid	30.95	23.94
Solyc06g008900.2.1	Tomato	nucleus	35.53	23.04
CDY21932	Canola	nucleus, plastid	29.67	19.71
Solyc08g077100.2.1	Tomato	nucleus	14.84	19.15
AT4G03000.2	Thale cress	nucleus	28.39	19.04
AT1G03365.2	Thale cress	nucleus	28.57	18.95
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	28.39	18.59
CDX89896	Canola	nucleus	28.02	18.26
GSMUA_Achr3P23730_001	Banana	nucleus	23.81	18.01
Solyc01g080430.2.1	Tomato	nucleus	28.02	17.85
GSMUA_Achr3P09160_001	Banana	nucleus	23.26	17.3
GSMUA_Achr2P01510_001	Banana	nucleus	23.63	15.99
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	3.48	15.83
Solyc08g006980.2.1	Tomato	nucleus	20.88	15.75
TraesCS1B01G101700.1	Wheat	cytosol	23.08	14.48
TraesCS1A01G084200.1	Wheat	cytosol	22.89	14.38
TraesCS1D01G085400.1	Wheat	cytosol	22.89	14.37
EER99333	Sorghum	nucleus, plastid	22.16	14.27
HORVU1Hr1G018310.1	Barley	cytosol	22.71	14.24
Os05t0141500-01	Rice	nucleus, plastid	21.98	13.82
Zm00001d006317_P002	Maize	plastid	21.43	13.67
OQU88874	Sorghum	nucleus	18.5	12.78
Zm00001d005154_P001	Maize	nucleus	17.58	12.2
Os05t0141400-01	Rice	plastid	4.58	11.16
CDY18168	Canola	nucleus	9.89	10.44
Zm00001d021404_P001	Maize	cytosol	21.43	10.34

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4CUY9	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF164	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc09g074120.1	EnsemblPlants:Solyc09g074120.1.1
UniParc:UPI000276B195	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:65861674..65865263

Molecular Weight (calculated)

62592.2 Da

IEP (calculated)

5.922

GRAVY (calculated)

-0.786

Length

546 amino acids

Sequence
(BLAST)

001: MSGTHGEIML RMISSSVIKM FDDNISDDAD EKSLAISDKE KGSRNNTKFE SKIPLGTSFD SHGSSLTEFL RYDLLEKPRK GVTLFEIDPL TSGCPHYDAE
101: QEVETAPNID SEDMSACCSF VLDKKLDLSS SGSTKKSSHP KMKNLVKFNQ PLTKESFDSQ CLSSPIAPAS DTSKVPPIKD NINEKDMDSL SMEPKFSKKV
201: PDNTTISSAV QDYYVGIPYN ESLGKYVPRN ERDENILFLT SHLKTLQEEL QRWSDWANEK VMQATRRLGK DQADLKRMRQ EKEDAENVHQ EKHMLEETTM
301: RKIMEMEQAF VNTYSMGKTI NSLLNTLEMD NVGLKKDLEA VMLSTGKHDM NVNNALAQEQ EALKKCQAAD MEKRSFEEDL FDLFKHEESV KQRFQQQADC
401: LKNEREQLRV KGKVQRHNFR EKVERNKQKY KEEIQKCESE ISRLRFQSER SITEALKRGI PQLTKGLSTY AESSDSNFVK MERECVMCMH EHISVVFLPC
501: AHQVICEYCN VLHQNKGMDE CPSCRTPIKE RISVHFPDSE KLATSE

Best Arabidopsis Sequence Match ( AT1G03365.1 )
(BLAST)

001: MSIVQKQEEM NGCGLNVDKV EAFTVSPQEK GRKNKRKLAD PSQPNASSLT EFPPYELPSL KPQNHLSGNG SVGEVSNQLQ VEVSESVEWD DPFACHLEEL
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG

Arabidopsis Description

RF4Putative E3 ubiquitin-protein ligase RF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.