Factsheet for Bra033393.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074160.1.1	Tomato	cytosol	12.27	55.0
Solyc10g050590.1.1	Tomato	cytosol	10.41	54.9
PGSC0003DMT400009741	Potato	nucleus	18.59	43.86
Solyc08g016350.1.1	Tomato	extracellular	11.15	41.67
CDX89896	Canola	nucleus	99.63	31.98
Bra036227.1-P	Field mustard	plastid	65.43	24.93
AT1G03365.2	Thale cress	nucleus	75.46	24.67
Bra005352.1-P	Field mustard	nucleus	27.88	24.35
Solyc09g074140.1.1	Tomato	nucleus	34.94	17.25
Solyc09g074120.1.1	Tomato	nucleus	31.97	15.75
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	47.21	15.23
GSMUA_Achr3P23730_001	Banana	nucleus	38.29	14.27
Solyc06g008900.2.1	Tomato	nucleus	43.49	13.9
GSMUA_Achr2P01510_001	Banana	nucleus	40.52	13.51
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	34.57	13.36
GSMUA_Achr3P09160_001	Banana	nucleus	36.06	13.22
Solyc09g074150.1.1	Tomato	nucleus	18.96	12.53
TraesCS1A01G084200.1	Wheat	cytosol	39.78	12.31
TraesCS1D01G085400.1	Wheat	cytosol	39.78	12.3
TraesCS1B01G101700.1	Wheat	cytosol	39.78	12.3
EER99333	Sorghum	nucleus, plastid	38.66	12.26
HORVU1Hr1G018310.1	Barley	cytosol	39.03	12.06
Zm00001d006317_P002	Maize	plastid	38.29	12.03
Os05t0141500-01	Rice	nucleus, plastid	38.66	11.98
PGSC0003DMT400009742	Potato	nucleus	35.32	11.73
Bra023274.1-P	Field mustard	nucleus	29.37	11.5
Solyc09g074200.1.1	Tomato	nucleus	34.2	11.4
Solyc09g074190.1.1	Tomato	nucleus	32.71	10.96
Zm00001d021404_P001	Maize	cytosol	40.15	9.55
OQU88874	Sorghum	nucleus	27.51	9.37
Zm00001d005154_P001	Maize	nucleus	24.91	8.51
Solyc10g050610.1.1	Tomato	nucleus	7.81	6.6
PGSC0003DMT400074463	Potato	cytosol	10.04	6.16
Os05t0141400-01	Rice	plastid	3.35	4.02
Solyc09g074170.1.1	Tomato	cytosol	2.97	2.5
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	1.12	2.5
CDY18168	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Bra033393.1	EnsemblPlants:Bra033393.1-P	EnsemblPlantsGene:Bra033393	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	PFAM:PF13920
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI00025449FF	UniProt:M4EX58	MapMan:35.1

Description

AT1G03370 (E=3e-091) | protein binding / zinc ion binding

Coordinates

chrA10:-:3906910..3907988

Molecular Weight (calculated)

30966.5 Da

IEP (calculated)

10.152

GRAVY (calculated)

-0.990

Length

269 amino acids

Sequence
(BLAST)

001: MEENTMKRLS EMEIAVKNAT SQFEKANNTA RRLEVEQSSL KKEMEAAKMR AAESAESYRE AKERGQKSFK DSQSWEGQKA MLQEELKVQR DKVTVMQKEV
101: NKAKNRQNQI EVTLKQEKTA KGKLTAQACA IKKERKKLEA LGKAEEERIK AKAEADMKYY IDNIKRLERD ITELKLKSEY SRIMALKKGG GGNEPKPRKR
201: ENHGVAKVKR ERECVMCLSE EMSVIFLPCA HQVLCFTCNQ LHEKEGMKDC PSCRGTIQRR IQARFARTG

Best Arabidopsis Sequence Match ( AT1G03365.2 )
(BLAST)

001: MSIVQKQEEM NGCGLNVDKV EAFTVSPQEK GRKNKRKLAD PSQPNASSLT EFPPYELPSL KPQNHLSGNG SVGEVSNQLQ VEVSESVEWD DPFACHLEEL
101: LSSNLLTLFL DTMKQLIDLG YTDDEVLKAV SRCRLYCGGN NLLSNIVNNT LSALKTGDEG AGSGDYVFED LQQLVSYTLV EMISLIKEVR PSLSTVEAMW
201: RLLMCDLNVL QAFEAEGDGL VSSSKLSDSE SLGAESNPPK SSDPDNPKPP QSDPQSNRNE PLKFGNFPNT PNSKKTQSSG TTPGKEVCSG STVSCQGMRS
301: TSFTLVSDEK LVSCRKGRTK KEIAMLRQKS CVEKIRTYSK GSGYKAAKFA SVGSFLLEKR VKSSSEFVPR NSSSKITAEI GVKVSLAEDS GCFVRKNSKL
401: DSPVVVVDAK GYITALPARS VKSASKKKTG SESVTLIPSA SEKKSDSSIP STSEKKSGSE SEEKASVSAK LAPDYYAGIP YDAALGIYVP RDKKDELILK
501: LVPRVNDLQN ELQVWTDWAN QKVKEATGRL LKDQPELKAL RKEREEAEQY KKEKQLLEEN TRKRLSEMDF ALKNATSQLE KAFNTAHRLE LEQSILKKEM
601: EAAKIKAVES AESFREAKER GERSLKDIHS WEGQKIMLQE ELKGQREKVT VLQKEVTKAK NRQNQIEAAL KQERTAKGKL SAQASLIRKE TKELEALGKV
701: EEERIKGKAE TDVKYYIDNI KRLEREISEL KLKSDYSRII ALKKGSSESK ATKRESLGMP KVKRERECVM CLSEEMSVIF LPCAHQVLCF KCNQLHEKEG
801: MMDCPSCRGT IHRRIQARFA RSG

Arabidopsis Description

RF4Putative E3 ubiquitin-protein ligase RF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.