Factsheet for Solyc06g008900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074160.1.1	Tomato	cytosol	4.16	58.33
Solyc10g050590.1.1	Tomato	cytosol	3.44	56.86
Solyc08g016350.1.1	Tomato	extracellular	4.39	51.39
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	7.13	50.0
Solyc10g050610.1.1	Tomato	nucleus	16.86	44.65
Solyc09g074200.1.1	Tomato	nucleus	41.92	43.74
Bra033393.1-P	Field mustard	nucleus	13.9	43.49
Solyc09g074190.1.1	Tomato	nucleus	41.21	43.21
Solyc09g074150.1.1	Tomato	nucleus	19.95	41.28
Solyc09g074140.1.1	Tomato	nucleus	26.13	40.37
CDY22093	Canola	nucleus	21.02	40.05
CDX91265	Canola	cytosol, mitochondrion, nucleus	11.88	38.17
Bra036227.1-P	Field mustard	plastid	31.0	36.97
Solyc09g074120.1.1	Tomato	nucleus	23.04	35.53
Solyc09g074170.1.1	Tomato	cytosol	13.3	35.0
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	34.32	34.65
AT4G03000.2	Thale cress	nucleus	32.19	33.29
GSMUA_Achr3P09160_001	Banana	nucleus	28.27	32.43
CDX89896	Canola	nucleus	32.19	32.34
AT1G03365.2	Thale cress	nucleus	31.47	32.2
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	26.6	32.18
GSMUA_Achr3P23730_001	Banana	nucleus	27.08	31.58
Solyc01g080430.2.1	Tomato	nucleus	31.71	31.16
GSMUA_Achr2P01510_001	Banana	nucleus	29.81	31.1
CDY21932	Canola	nucleus, plastid	30.05	30.78
CDY18168	Canola	nucleus	16.98	27.66
TraesCS1A01G084200.1	Wheat	cytosol	24.94	24.17
EER99333	Sorghum	nucleus, plastid	24.11	23.94
TraesCS1B01G101700.1	Wheat	cytosol	24.58	23.79
Solyc08g006980.2.1	Tomato	nucleus	20.31	23.62
HORVU1Hr1G018310.1	Barley	cytosol	24.35	23.54
Zm00001d006317_P002	Maize	plastid	23.87	23.48
TraesCS1D01G085400.1	Wheat	cytosol	24.23	23.45
Os05t0141500-01	Rice	nucleus, plastid	24.11	23.39
Solyc08g077100.2.1	Tomato	nucleus	11.28	22.46
OQU88874	Sorghum	nucleus	17.93	19.11
Zm00001d021404_P001	Maize	cytosol	23.87	17.77
Zm00001d005154_P001	Maize	nucleus	16.39	17.53
Os05t0141400-01	Rice	plastid	4.04	15.18

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4C3S0	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF164	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc06g008900.2	EnsemblPlants:Solyc06g008900.2.1
UniParc:UPI0002766AFA	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:2840267..2843968

Molecular Weight (calculated)

93598.5 Da

IEP (calculated)

6.611

GRAVY (calculated)

-0.526

Length

842 amino acids

Sequence
(BLAST)

001: MNVGDHNSSD GANEKSLVIS AQEKGSRNKR KFLSEFPLDV PIDTPVLSLT EFPRYELLEE KLLSTPNEAS SLEGRCHQSN EKQGVETLQQ ADWDDTIACQ
101: LMELLFHNLS GTFQSAIKRI VECGYNEETA EWVLLRSGLY HGSKDAVSTI VDGALALLSR EKELDTSTYL IFEDLNSLVE YTMLEMICVL REVKPDFTVA
201: EAMWCLLICD LNLLHACSIE RDLSVDSCSL ESPRKSSSGS KPAQPKDAFV VSQLGLDKLQ LSKPSMPIAK GLQSEIPCDD PVALLSNSIY SHLHGVDITA
301: NRSSARFPAA KSNSAGVSGE SVLSITKAAI LEEKNGTGRR GSSMISKKDM LRQKTFHFEK SYKGRMGKGS FKAKLTTWSS MVLDKTLNSE SCSSGLAMKS
401: TNSKVTTTVK CNGPLEVGSS HSSSTYPSIA PSSETASVPA TQDTVCALPA VNTNISVPLT PDPKSSSNTP GSTPAPPKVL DYYAGIPYDE SLGKYVPQNE
501: KDKIVLLRIA RIQTLQKELQ GWTDWANEKV MQAARRLGKD QGELKMLKQE KEEAEKLQKE KQMVEENTMK RLSEMECALS NASGQSKMAD STLHRLKEEN
601: VSLKKEMDAA TLAALESATN VHQAVAREQE MLKNCQALEM ENGSLQHNFS TLKREAVHFE QELERAKTRQ NQLKVLLEQE EREKRRVLQQ ADSLKAEREK
701: RGVQSKMEED NIRETTERNM QKCKEDIKKL ESEISLLRYQ SEGSKIEALR RGINHTRPQS PKLTKSLAVF EENLGSASVE IERECVMCLS EEMTVVFLPC
801: AHQVLCAQCS VLHEKQGMND CPSCRTPIKK RINVQFARSS RS

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.