Factsheet for Solyc10g050610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	13.52	35.83
PGSC0003DMT400074463	Potato	cytosol	41.51	30.14
Solyc09g074170.1.1	Tomato	cytosol	27.67	27.5
Solyc09g074150.1.1	Tomato	nucleus	31.13	24.32
Solyc09g074190.1.1	Tomato	nucleus	56.92	22.54
Solyc09g074200.1.1	Tomato	nucleus	54.4	21.44
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	42.14	19.25
Solyc09g074120.1.1	Tomato	nucleus	32.08	18.68
Solyc09g074140.1.1	Tomato	nucleus	28.93	16.88
Solyc06g008900.2.1	Tomato	nucleus	44.65	16.86
CDY22093	Canola	nucleus	19.81	14.25
Solyc08g016350.1.1	Tomato	extracellular	3.14	13.89
Bra036227.1-P	Field mustard	plastid	30.19	13.6
GSMUA_Achr3P23730_001	Banana	nucleus	29.87	13.16
AT4G03000.2	Thale cress	nucleus	31.45	12.29
GSMUA_Achr2P01510_001	Banana	nucleus	30.82	12.14
CDY21932	Canola	nucleus, plastid	30.5	11.8
GSMUA_Achr3P09160_001	Banana	nucleus	27.04	11.72
CDY18168	Canola	nucleus	18.87	11.61
CDX89896	Canola	nucleus	29.87	11.34
Solyc01g080430.2.1	Tomato	nucleus	30.19	11.2
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	28.62	10.91
AT1G03365.2	Thale cress	nucleus	27.99	10.81
Os05t0141400-01	Rice	plastid	7.55	10.71
Solyc08g006980.2.1	Tomato	nucleus	23.58	10.36
Os05t0141500-01	Rice	nucleus, plastid	25.79	9.45
TraesCS1B01G101700.1	Wheat	cytosol	25.47	9.31
Solyc08g077100.2.1	Tomato	nucleus	12.26	9.22
TraesCS1A01G084200.1	Wheat	cytosol	25.16	9.21
TraesCS1D01G085400.1	Wheat	cytosol	25.16	9.2
HORVU1Hr1G018310.1	Barley	cytosol	25.16	9.18
EER99333	Sorghum	nucleus, plastid	24.21	9.08
Zm00001d006317_P002	Maize	plastid	23.58	8.76
Bra033393.1-P	Field mustard	nucleus	6.6	7.81
Zm00001d005154_P001	Maize	nucleus	18.87	7.62
OQU88874	Sorghum	nucleus	18.55	7.47
CDX91265	Canola	cytosol, mitochondrion, nucleus	5.66	6.87
Solyc09g074160.1.1	Tomato	cytosol	1.26	6.67
Zm00001d021404_P001	Maize	cytosol	23.58	6.63
Solyc10g050590.1.1	Tomato	cytosol	0.94	5.88

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
UniProt:K4D0L6	PANTHER:PTHR10044	PANTHER:PTHR10044:SF164	EnsemblPlantsGene:Solyc10g050610.1	EnsemblPlants:Solyc10g050610.1.1	UniParc:UPI000276A3CE

Description

No Description!

Coordinates

chr10:-:50173749..50175216

Molecular Weight (calculated)

36057.4 Da

IEP (calculated)

9.825

GRAVY (calculated)

-0.552

Length

318 amino acids

Sequence
(BLAST)

001: MFQSAVKRIA NCGYSQEIAK RVILKSGLYH GSKDFVSNVD DGALDLLSRK KVLNIGRPVV FADLPSLVDY TLLEMECVLR EAKSKATVFE DKSGAGKKAL
101: NSKKDLRRRK TYQFEKNCRS RTSKIIKANM TSWGTLVLHK KLDLSFSGAT KKSLQSKVKI FVKCNQPLSK ERFDGPCLSS PIAPTSDTSE VPPIQDNINE
201: KNSYSLSNGT LQKELQGWSD WENEKVMQAT WRLGKDQIEL KRIRKEKEDA DNVHQENQIL VETTTERIMV MERALVNTSS MGETINSLLN TLVMHNVQLK
301: KDLEACNALY QRACFERQ

Best Arabidopsis Sequence Match ( AT4G03000.4 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEVII SFLRN

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.