Factsheet for GSMUA_Achr3P23730_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P01510_001	Banana	nucleus	67.45	60.35
Solyc09g074160.1.1	Tomato	cytosol	3.6	43.33
GSMUA_Achr3P09160_001	Banana	nucleus	42.8	42.1
Solyc10g050590.1.1	Tomato	cytosol	2.91	41.18
KRH20958	Soybean	nucleus, plastid	49.03	40.09
VIT_05s0020g02320.t01	Wine grape	nucleus	48.89	39.66
KRH11313	Soybean	nucleus, plastid	48.34	39.44
Bra033393.1-P	Field mustard	nucleus	14.27	38.29
KRH02160	Soybean	nucleus	46.26	38.08
KRH50955	Soybean	nucleus	45.98	37.3
CDX91265	Canola	cytosol, mitochondrion, nucleus	13.43	37.02
PGSC0003DMT400081760	Potato	plastid	45.57	36.52
Solyc01g080430.2.1	Tomato	nucleus	42.8	36.06
CDY22093	Canola	nucleus	22.02	35.97
EER99333	Sorghum	nucleus, plastid	41.14	35.02
PGSC0003DMT400009741	Potato	nucleus	5.4	34.21
Zm00001d006317_P002	Maize	plastid	39.75	33.53
HORVU1Hr1G018310.1	Barley	cytosol	40.44	33.52
TraesCS1A01G084200.1	Wheat	cytosol	40.3	33.49
TraesCS1B01G101700.1	Wheat	cytosol	40.3	33.45
Solyc08g016350.1.1	Tomato	extracellular	3.32	33.33
TraesCS1D01G085400.1	Wheat	cytosol	40.03	33.22
Os05t0141500-01	Rice	nucleus, plastid	39.61	32.95
Bra036227.1-P	Field mustard	plastid	31.72	32.44
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	5.12	30.83
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	28.12	30.21
Solyc10g050610.1.1	Tomato	nucleus	13.16	29.87
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	26.87	28.66
Solyc09g074140.1.1	Tomato	nucleus	21.33	28.26
AT4G03000.2	Thale cress	nucleus	31.44	27.89
Solyc06g008900.2.1	Tomato	nucleus	31.58	27.08
CDX89896	Canola	nucleus	31.16	26.85
CDY21932	Canola	nucleus, plastid	30.33	26.64
AT1G03365.2	Thale cress	nucleus	29.92	26.25
Zm00001d021404_P001	Maize	cytosol	40.17	25.64
Solyc09g074150.1.1	Tomato	nucleus	14.4	25.55
PGSC0003DMT400074463	Potato	cytosol	15.37	25.34
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	29.22	25.3
PGSC0003DMT400009742	Potato	nucleus	27.7	24.69
Solyc09g074190.1.1	Tomato	nucleus	27.29	24.53
Solyc09g074120.1.1	Tomato	nucleus	18.01	23.81
Solyc09g074200.1.1	Tomato	nucleus	26.18	23.42
CDY18168	Canola	nucleus	15.65	21.86
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	20.91	21.7
Solyc09g074170.1.1	Tomato	cytosol	9.0	20.31

Protein Annotations

EnsemblPlants:GSMUA_Achr3P23730_001	EnsemblPlants:GSMUA_Achr3T23730_001	EnsemblPlantsGene:GSMUA_Achr3G23730_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	PFAM:PF13920
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0002953438	UniProt:M0SH89	MapMan:35.1

Description

Putative E3 ubiquitin-protein ligase RF298 [Source:GMGC_GENE;Acc:GSMUA_Achr3G23730_001]

Coordinates

chr3:+:24480190..24484558

Molecular Weight (calculated)

80772.8 Da

IEP (calculated)

6.276

GRAVY (calculated)

-0.551

Length

722 amino acids

Sequence
(BLAST)

001: MATVVAGDSS SLNPSFAIQE AGSRNKRKFH ADLPLVDSNA LADALQTETH MFGFKEGPEL DEFQDVDWSC LTESQLEEIL LDNLDVVFMT AIKMITSHGY
101: TKEVATSAVL SSGLCYGYKD TVSNVVDNAL ALLRRGQQVD SSSKENISKN LKELEKRVLA EMISVLRGVR PFISTGEALW CLLMSDANVT QACAMDSSSS
201: NAVISDEYLG TSVAAKLESG SESNDTIPVS SKSNNDLVSK PKAMKESLIS SSNHVGESSS SIVSRSPQEE KSVSGKKVHV GCSKRGTVQH RSVHVEKSYR
301: PLGTKAVSRA CRQSGSGSLI MDRKCKQISD ATSISGRKEV TSRSMTPTTD TELSLSLSSG SSIALSPTQE SNVDAPNCSS NGMIHSGTTF RDWIPEDKKD
401: EMLLILVPLM RELQVQLQDW SDWAQEKVMQ AARRLSKEKV ELQILRQEKE EAACLQKERQ TLEENTRKKL AEMELAISKA SAQVERANAA ARRLEFENTQ
501: LRLGMEAAKL HAAQSEANCQ EASRREMKTL KMFQSWEKQQ IMFQEELANE KHQLSQLQQQ LEQVKELQDQ SEARWRQEEK MKNEALAEIS AERNEWEQIE
601: TSAKSQENAL RLKAENDLQR CKSDIRRLEQ QIAQVRQVTN LSILAAPRWG TERTYACRLL ELQRERECVM CLSEEMSVVF LPCAHQVVCT KCNELHEKQA
701: MKDCPSCRTP IQRRVSVRLA DR

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.