CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11313	Soybean	nucleus, plastid	89.47	89.27
KRH02160	Soybean	nucleus	67.16	67.62
KRH50955	Soybean	nucleus	66.25	65.73
VIT_05s0020g02320.t01	Wine grape	nucleus	63.65	63.15
PGSC0003DMT400081760	Potato	plastid	55.61	54.49
Solyc01g080430.2.1	Tomato	nucleus	52.66	54.26
GSMUA_Achr3P23730_001	Banana	nucleus	40.09	49.03
GSMUA_Achr2P01510_001	Banana	nucleus	42.24	46.22
GSMUA_Achr3P09160_001	Banana	nucleus	35.67	42.92
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	31.94	33.81
EER99333	Sorghum	nucleus, plastid	32.39	33.73
HORVU1Hr1G018310.1	Barley	cytosol	31.94	32.38
Zm00001d006317_P002	Maize	plastid	31.37	32.36
KRH04325	Soybean	nucleus	24.8	32.25
TraesCS1A01G084200.1	Wheat	cytosol	31.71	32.22
TraesCS1B01G101700.1	Wheat	cytosol	31.71	32.18
Os05t0141500-01	Rice	nucleus, plastid	31.6	32.14
TraesCS1D01G085400.1	Wheat	cytosol	31.48	31.95
KRH58212	Soybean	nucleus	25.48	31.38
KRH28281	Soybean	nucleus, plastid	21.86	28.51
Zm00001d021404_P001	Maize	cytosol	33.18	25.91
OQU88874	Sorghum	nucleus	21.06	23.54
Zm00001d005154_P001	Maize	nucleus	20.05	22.49
Os05t0141400-01	Rice	plastid	3.85	15.18

Protein Annotations

EntrezGene:100818439	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02008331	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G212200
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	UniProt:I1M187
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH20958	ProteinID:KRH20958	ProteinID:KRH20958.1	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF141	SUPFAM:SSF57850	UniParc:UPI000233BF26	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:32586534..32591014

Molecular Weight (calculated)

97781.6 Da

IEP (calculated)

6.468

GRAVY (calculated)

-0.613

Length

883 amino acids

Sequence
(BLAST)

001: MASLVASGSS QMAPSVSVQE KGSRNKRKFR ADPPLGEPNK IIPSPQHESL SNEFSAEKFE ITTGHGQASA SDMCSVSQDH SDGLKLDLGL SSPLPSSDVR
101: LSQPKEELEV DEFHDADWSD LTEAQLEELV LSNLDTIFKS AVKKIVACGY IEDVATKAIL RSGICYGCKD AVSNVVDKGL AFLRNGQEID PSREHYFEDL
201: VQLEKYILAE LVCVLREVRP LFSTGDAMWR LLICDMNVSL ACAMDDDPSS SLGSDGIDDG CSSVQTEPQL KLETKGPELS PCKSISSGSQ PEKSSVAGNT
301: GLDKSKKSQI LVGPSGKEAA NSGCEFIDKS SSTSGTSQSP LVEEKCGSVR KVHSSSNKRD YILRQKSFHM EKSYRTYGPK GSSRGGRLNG LNGLILDKKL
401: KSVSESTTIN LKSASINISK AVGVDVTQDN LNADFSSNDG PSTPTAFSLD STVTVSQSTN TLSSVHEANA IPAVGSPNVL SATDTDLSLS LSSNSKSPTT
501: TVRCNNEAPN SSCMGIPHDR SLGKWIPQDR KDEMILKLVP RVRELQNQLQ EWTEWANQKV MQAARRLSKD RAELKTLRQE KDEVERLKKE KQSLEENTMK
601: KISEMENALS KASAQVERTN ADVRKLEVEN AALRKEMEVA KLQAAESATS CQEVSRREKK TQMKFQSWEK QKSLFQEELM NEKHKLAQLQ QELEQAKVQQ
701: QQVEARWQQA AKAKEELLLQ ASSIRKEREQ IEESAKSKED MIKLKAEENL HRYRDDIQKL EKEIAQLRQK TDSSKIAALR RGIDGNYVSS FMDVKSMALK
801: ESRATFISEM VSNLNDYSLI GGVKRERECV MCLSEEMSVV FLPCAHQVVC TTCNDLHEKQ GMQDCPSCRS PIQRRISVRF ART

Best Arabidopsis Sequence Match ( AT4G03000.1 )
(BLAST)

001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG

Arabidopsis Description

RF298Putative E3 ubiquitin-protein ligase RF298 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPJ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.