CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04325
KRH28281
KRH45246
KRH58212
KRH74183
KRH75396

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32530.1	KRH45246	AT1G13330.1	19187040
AT1G32530.1	KRH75396	AT1G13330.1	19187040
AT1G32530.1	KRH04325	AT1G32530.1	19187040
AT1G32530.1	KRH28281	AT1G32530.1	19187040
AT1G32530.1	KRH58212	AT1G32530.1	19187040
AT1G32530.1	KRH74183	AT4G29170.1	19187040

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58212	Soybean	nucleus	88.37	83.68
VIT_02s0012g01020.t01	Wine grape	nucleus	67.75	63.62
Bra005352.1-P	Field mustard	nucleus	26.8	59.09
KRH28281	Soybean	nucleus, plastid	57.88	58.05
CDX84219	Canola	mitochondrion, nucleus	49.93	57.26
CDY31680	Canola	mitochondrion, nucleus	46.1	55.2
Bra023274.1-P	Field mustard	nucleus	54.79	54.15
CDX93827	Canola	cytosol	54.79	54.15
CDY01268	Canola	cytosol	54.34	53.71
AT2G35330.1	Thale cress	endoplasmic reticulum	56.85	52.3
AT1G32530.1	Thale cress	cytosol	53.9	51.48
PGSC0003DMT400052886	Potato	nucleus	54.49	51.18
Solyc08g006980.2.1	Tomato	nucleus	51.69	48.48
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	47.86	48.36
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	46.83	46.97
Solyc08g077100.2.1	Tomato	nucleus	26.95	43.26
KXG35515	Sorghum	mitochondrion	35.2	37.11
Zm00001d020292_P001	Maize	mitochondrion, nucleus	34.46	36.51
TraesCS5A01G189000.1	Wheat	mitochondrion	34.61	35.66
TraesCS5D01G202000.1	Wheat	mitochondrion	34.46	35.51
TraesCS5B01G194700.1	Wheat	mitochondrion	34.32	35.36
Os09t0371700-01	Rice	nucleus	11.05	35.21
HORVU5Hr1G058760.1	Barley	plastid	33.28	31.17
OQU93157	Sorghum	plastid	9.87	30.59
KRH02160	Soybean	nucleus	32.55	25.2
KRH20958	Soybean	nucleus, plastid	32.25	24.8
KRH50955	Soybean	nucleus	32.25	24.61
KRH11313	Soybean	nucleus, plastid	31.81	24.41
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	24.01	19.54

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A0R0FP12	EMBL:ACUP02010400	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G154400
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR013083	EnsemblPlants:KRH04325	ProteinID:KRH04325	ProteinID:KRH04325.1	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR10044	PANTHER:PTHR10044:SF133	SUPFAM:SSF57850	UniParc:UPI0006ED89C0	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:13022389..13028100

Molecular Weight (calculated)

75723.2 Da

IEP (calculated)

6.153

GRAVY (calculated)

-0.604

Length

679 amino acids

Sequence
(BLAST)

001: MGCTMREKHI RANRRPRSVK PDPDSCDKDA ISKSIAESGL KPFKYHLGLN DSSQSPNSIP NAEETGWGYC TEEQLEEILL KNLEFIYNEA VSKLVALGYD
101: EDVAVKAILR NGHCYGGMDV LTNILHNSLA FLNSNSDSGG GGGGAGYNSN GGNLDESDPV FSDLRQLEEY SLAGMLCLLQ QVRPHLSKGD AMWCLLMSDL
201: HVGRASAMEI PEPGNGSTVP AAEMNLQLQR DIEFPKRFNL SPSMKSLLKR NVAMFAAGFR ANSKQLQAQV KVVPGRSTVP SLDSSAVSGT EVPAEQSGGN
301: SQNLDSQDAV NSVQSKFGDL NLDENLELVA EDQKDEVIVT LFHQIKDLEK QVSERKDWAH QKAMQAARKL SSDLTELKML RMEREETQKL KKGKPVLEDT
401: TMKRLSEMEN ALRKASGQLD LGNAAVRRLE TENAEMKAEM EASKLSASES VTACLEVAKR EKKCLKKLLA WEKQKAKLQQ EISDEKEKIL KTKEILVQIR
501: QCQKEAEVKW KEELKAKEEA LALVEEERHC KEAAESNNKR KLEALRLKIE IDFQRHKDDL LRLEQELSRL KASAQSAELH NQSSTSPTSD CKGAKPQRET
601: IARLLQELDN LEDFSEKEIN SNRECIVCMK DEVSIVFLPC AHQVMCASCS DEYGRKGKAT CPCCRVQIQQ RIRVFGASS

Best Arabidopsis Sequence Match ( AT2G35330.1 )
(BLAST)

001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.