Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G194700.1 | Wheat | mitochondrion | 98.94 | 98.94 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 96.21 | 96.21 |
| HORVU5Hr1G058760.1 | Barley | plastid | 89.07 | 80.97 |
| Os09t0371700-01 | Rice | nucleus | 23.22 | 71.83 |
| KXG35515 | Sorghum | mitochondrion | 62.52 | 63.98 |
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 61.61 | 63.34 |
| OQU93157 | Sorghum | plastid | 14.87 | 44.75 |
| GSMUA_Achr1P24020_001 | Banana | mitochondrion, nucleus | 41.12 | 40.33 |
| GSMUA_Achr7P04700_001 | Banana | mitochondrion, nucleus | 40.52 | 39.44 |
| Bra005352.1-P | Field mustard | nucleus | 18.21 | 38.96 |
| CDX84219 | Canola | mitochondrion, nucleus | 31.87 | 35.47 |
| CDY31680 | Canola | mitochondrion, nucleus | 30.2 | 35.1 |
| KRH04325 | Soybean | nucleus | 35.51 | 34.46 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 36.87 | 33.61 |
| Solyc08g077100.2.1 | Tomato | nucleus | 21.55 | 33.57 |
| PGSC0003DMT400052886 | Potato | nucleus | 36.57 | 33.33 |
| KRH58212 | Soybean | nucleus | 36.12 | 33.19 |
| Solyc08g006980.2.1 | Tomato | nucleus | 35.66 | 32.46 |
| CDX93827 | Canola | cytosol | 33.54 | 32.17 |
| Bra023274.1-P | Field mustard | nucleus | 33.54 | 32.17 |
| CDY01268 | Canola | cytosol | 32.63 | 31.3 |
| AT2G35330.1 | Thale cress | endoplasmic reticulum | 34.9 | 31.17 |
| AT1G32530.1 | Thale cress | cytosol | 33.08 | 30.66 |
| KRH28281 | Soybean | nucleus, plastid | 31.11 | 30.28 |
| TraesCS1D01G085400.1 | Wheat | cytosol | 23.98 | 18.16 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G202000.1 | EnsemblPlantsGene:TraesCS5D01G202000 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF165 | PFAM:PF13920 | PFscan:PS50089 |
| SEG:seg | SUPFAM:SSF57850 | TIGR:cd16449 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5D:+:306198171..306202468
Molecular Weight (calculated)
73177.6 Da
IEP (calculated)
7.739
GRAVY (calculated)
-0.814
Length
659 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQPRERGS RAARKGRPVR TPATLLALNP TPDPDLSAQA SDDVSPWGRS TADELEDRLL KRLEEAYAAA LAGLAELGYA EDSALRAVLR AGHCYGKLDD
101: PVDNIVANAR SFLNDPDAPG GAGGFADLRR LEEYSLAGLV CLLQSSRPTI SRVEAMWCLL ANDLRLEQAI NMGASFTDKS PHSGFSTAES DAPSPAAPAP
201: GQRGYCHFHA TTATENHMFD PETFMRLAMR AHTDSTRPHT ESTAGVVSCV KNTWSRSGGS AAPAPAAPDG QGQPKQSFAM KVSTDDLIES VVMELESLDI
301: DKKDPPAEKP DPKNEMVRDL IKQTREMEEQ LKERKEWAQK KAVQAARKLG NDLTELRMLR MEHDDNQRRK NDKQSLEDET MKRLTRLEYE LKKKSGQLDR
401: SNASVQKLEM ENAEIRAEME AAKLSASETE RQCQILLKKE KKDSKKLELW ERQKAKLQEE IAECKAKIAQ ADKELAGVNK SIRNMEVKIR EDTKATEDNL
501: ALAEQERGKR ESAKADADRR LEEIRRKTEV ESQCYKDDLR RLQDQLSRLQ KSMGANAPTV PSAYPPAMTD RNAAGAPKQP NQKAPPASNR QQEPIQNTGR
601: RRGCIICKRE EACVMLLQCA HQVLCVGCNK QHEEKGAVRC PSCNAKIEER IRVFGASSN
101: PVDNIVANAR SFLNDPDAPG GAGGFADLRR LEEYSLAGLV CLLQSSRPTI SRVEAMWCLL ANDLRLEQAI NMGASFTDKS PHSGFSTAES DAPSPAAPAP
201: GQRGYCHFHA TTATENHMFD PETFMRLAMR AHTDSTRPHT ESTAGVVSCV KNTWSRSGGS AAPAPAAPDG QGQPKQSFAM KVSTDDLIES VVMELESLDI
301: DKKDPPAEKP DPKNEMVRDL IKQTREMEEQ LKERKEWAQK KAVQAARKLG NDLTELRMLR MEHDDNQRRK NDKQSLEDET MKRLTRLEYE LKKKSGQLDR
401: SNASVQKLEM ENAEIRAEME AAKLSASETE RQCQILLKKE KKDSKKLELW ERQKAKLQEE IAECKAKIAQ ADKELAGVNK SIRNMEVKIR EDTKATEDNL
501: ALAEQERGKR ESAKADADRR LEEIRRKTEV ESQCYKDDLR RLQDQLSRLQ KSMGANAPTV PSAYPPAMTD RNAAGAPKQP NQKAPPASNR QQEPIQNTGR
601: RRGCIICKRE EACVMLLQCA HQVLCVGCNK QHEEKGAVRC PSCNAKIEER IRVFGASSN
001: MGCTVREKHV RPNRKTRSVK PEFDPCCLLD RTALSKSIVE SSLKHLVYHP GLLDSCPESN PSGSFEDNNG WGYCTEEQLE DILLKHLEYL YNEAISKLVG
101: SGYDEDVALR AVLSNGYCYG GMDVMTNILH NSLAYLKSNT GEGSNVNNED QSETVFTDLR QLEEYSLAGM VYLLQQVKPN LSKGDAMWCL LMSELHVGRA
201: STMDIPSSGK GDSSNVGVGG ASSTVNGVGG AIAPALCRFH GGWGFGNGKG PKFSGNGFSL HSEELTLQRE IDCPRRFNLS PSMKSLLREN VAAFAAGYRA
301: SMEQKKQVQM QSETSGTSLS CTAAATHSEK CEQPHVFGSE ECFSSVLEKF RDLNLDDNVD SAPEELKDDA LIGLLQQVQD LKKQLKERKD WAQKKAMQAA
401: QKVSDELSEL KSLRSEREEI QRVKKGKQTR EDSTLKKLSE MENALRKASG QVDKANAVVR ALENESAEIR AEMEASKLSA SESLTACMEA SKKEKKCLKK
501: LLAWEKQKMK LQDEITAEKE KIKALNRALA QITQEEKEYE AKWRQEQKAK EQVLAQVEEE QRSKEAIEAS NKRKVESLRL KIEIDFQRHK DDLQRLEQEL
601: SRLNKASSTD SSLQSNNTSH TKVKSDKSKG ETMSKLLEEL NRLDGSYEKE ANYDRECLIC MKDEVSVVFL PCAHQVVCAS CSDSFMGSGK ATCPCCRAPV
701: QQRIRVFGAS S
101: SGYDEDVALR AVLSNGYCYG GMDVMTNILH NSLAYLKSNT GEGSNVNNED QSETVFTDLR QLEEYSLAGM VYLLQQVKPN LSKGDAMWCL LMSELHVGRA
201: STMDIPSSGK GDSSNVGVGG ASSTVNGVGG AIAPALCRFH GGWGFGNGKG PKFSGNGFSL HSEELTLQRE IDCPRRFNLS PSMKSLLREN VAAFAAGYRA
301: SMEQKKQVQM QSETSGTSLS CTAAATHSEK CEQPHVFGSE ECFSSVLEKF RDLNLDDNVD SAPEELKDDA LIGLLQQVQD LKKQLKERKD WAQKKAMQAA
401: QKVSDELSEL KSLRSEREEI QRVKKGKQTR EDSTLKKLSE MENALRKASG QVDKANAVVR ALENESAEIR AEMEASKLSA SESLTACMEA SKKEKKCLKK
501: LLAWEKQKMK LQDEITAEKE KIKALNRALA QITQEEKEYE AKWRQEQKAK EQVLAQVEEE QRSKEAIEAS NKRKVESLRL KIEIDFQRHK DDLQRLEQEL
601: SRLNKASSTD SSLQSNNTSH TKVKSDKSKG ETMSKLLEEL NRLDGSYEKE ANYDRECLIC MKDEVSVVFL PCAHQVVCAS CSDSFMGSGK ATCPCCRAPV
701: QQRIRVFGAS S
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.