Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G32530.1 | EER91004 | AT1G13330.1 | 19187040 |
| AT1G32530.1 | KXG35515 | AT1G32530.1 | 19187040 |
| AT1G32530.1 | OQU93157 | AT1G32530.1 | 19187040 |
| AT1G32530.1 | EER98621 | AT4G29170.1 | 19187040 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 91.93 | 92.36 |
| Os09t0371700-01 | Rice | nucleus | 23.14 | 69.95 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 64.6 | 63.13 |
| TraesCS5D01G202000.1 | Wheat | mitochondrion | 63.98 | 62.52 |
| TraesCS5B01G194700.1 | Wheat | mitochondrion | 63.98 | 62.52 |
| OQU93157 | Sorghum | plastid | 20.03 | 58.9 |
| HORVU5Hr1G058760.1 | Barley | plastid | 62.27 | 55.31 |
| Bra005352.1-P | Field mustard | nucleus | 19.72 | 41.23 |
| GSMUA_Achr1P24020_001 | Banana | mitochondrion, nucleus | 42.39 | 40.62 |
| GSMUA_Achr7P04700_001 | Banana | mitochondrion, nucleus | 41.93 | 39.88 |
| CDX84219 | Canola | mitochondrion, nucleus | 32.61 | 35.47 |
| KRH04325 | Soybean | nucleus | 37.11 | 35.2 |
| Solyc08g077100.2.1 | Tomato | nucleus | 22.83 | 34.75 |
| CDY31680 | Canola | mitochondrion, nucleus | 30.59 | 34.74 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 38.2 | 34.02 |
| KRH58212 | Soybean | nucleus | 36.96 | 33.19 |
| PGSC0003DMT400052886 | Potato | nucleus | 35.09 | 31.26 |
| KRH28281 | Soybean | nucleus, plastid | 32.76 | 31.17 |
| Solyc08g006980.2.1 | Tomato | nucleus | 34.94 | 31.08 |
| CDX93827 | Canola | cytosol | 32.92 | 30.86 |
| Bra023274.1-P | Field mustard | nucleus | 32.76 | 30.71 |
| CDY01268 | Canola | cytosol | 32.3 | 30.28 |
| AT2G35330.1 | Thale cress | endoplasmic reticulum | 34.32 | 29.95 |
| AT1G32530.1 | Thale cress | cytosol | 32.61 | 29.54 |
| EER99333 | Sorghum | nucleus, plastid | 23.14 | 17.57 |
| OQU88874 | Sorghum | nucleus | 19.41 | 15.82 |
Protein Annotations
| EnsemblPlants:KXG35515 | EnsemblPlantsGene:SORBI_3002G185900 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF165 | PFAM:PF13920 | PFscan:PS50089 |
| ProteinID:KXG35515 | ProteinID:KXG35515.1 | SEG:seg | UniParc:UPI00081AC980 | UniProt:A0A1B6QC73 | MapMan:35.1 |
Description
hypothetical protein
Coordinates
chr2:+:56980129..56985472
Molecular Weight (calculated)
71476.7 Da
IEP (calculated)
7.727
GRAVY (calculated)
-0.764
Length
644 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQPRERGS RSSRKGRSAR AVPAPAPPPA SDPDPAAGED AAPWLRATAD ELEERLLKRL DEAYAAALAR LADLGHGEEA SLEAVLHSGH CYGKLNDPVS
101: NIVANARAYL SDPNHATASG GFADLRRLEE YSLAGLVCLL QSSRPTLTRA EALWCLLSSD LRLEEAIAIG SSLNGEPSST AVPAESEELP PAVAEIAQRG
201: CIHYHNTTAA AAQDPTLFDP EAFMRLAIRQ GPAAATISCL KAAGWSRSSG TIQEGQPKES FAKKLSTEEL IESVVAELEA LDIDKKDPPD ANPDPKNQMA
301: RDLIKQTREM EAQLKERREW AQGKAIQAAR KLGADLTELR VLRMEHDENQ RRKKEKQVME DDTMKRLAHL ENELKKKSGQ LDRSNATVQR LEMENAEIRA
401: EMEAAKLSAS ETEKQCQGLL RKEKKDSKRL EVWERQKAKL KEDIADCKTK ITQAERELAE VNKAIKNMEK KIREDTRVKE ENMVLLEEER RKKEAAKADS
501: DRRLEELRRK KEVESQCYKD DLHRLQDELS RLQKSAGATQ QAVPSTNFTG TANRSAARAP KQQPIQRPQP ASNRSLPPPA QKPSRRRDCV VCKKEEACVI
601: LLQCAHQVLC VGCNKLHEDK GISRCPCCSA EVEERIRVFG ASSN
101: NIVANARAYL SDPNHATASG GFADLRRLEE YSLAGLVCLL QSSRPTLTRA EALWCLLSSD LRLEEAIAIG SSLNGEPSST AVPAESEELP PAVAEIAQRG
201: CIHYHNTTAA AAQDPTLFDP EAFMRLAIRQ GPAAATISCL KAAGWSRSSG TIQEGQPKES FAKKLSTEEL IESVVAELEA LDIDKKDPPD ANPDPKNQMA
301: RDLIKQTREM EAQLKERREW AQGKAIQAAR KLGADLTELR VLRMEHDENQ RRKKEKQVME DDTMKRLAHL ENELKKKSGQ LDRSNATVQR LEMENAEIRA
401: EMEAAKLSAS ETEKQCQGLL RKEKKDSKRL EVWERQKAKL KEDIADCKTK ITQAERELAE VNKAIKNMEK KIREDTRVKE ENMVLLEEER RKKEAAKADS
501: DRRLEELRRK KEVESQCYKD DLHRLQDELS RLQKSAGATQ QAVPSTNFTG TANRSAARAP KQQPIQRPQP ASNRSLPPPA QKPSRRRDCV VCKKEEACVI
601: LLQCAHQVLC VGCNKLHEDK GISRCPCCSA EVEERIRVFG ASSN
001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.