CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04325
KRH28281
KRH45246
KRH58212
KRH74183
KRH75396

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32530.1	KRH45246	AT1G13330.1	19187040
AT1G32530.1	KRH75396	AT1G13330.1	19187040
AT1G32530.1	KRH04325	AT1G32530.1	19187040
AT1G32530.1	KRH28281	AT1G32530.1	19187040
AT1G32530.1	KRH58212	AT1G32530.1	19187040
AT1G32530.1	KRH74183	AT4G29170.1	19187040

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04325	Soybean	nucleus	83.68	88.37
VIT_02s0012g01020.t01	Wine grape	nucleus	67.22	66.67
KRH28281	Soybean	nucleus, plastid	57.18	60.56
Bra005352.1-P	Field mustard	nucleus	25.52	59.42
Bra023274.1-P	Field mustard	nucleus	55.65	58.08
CDX93827	Canola	cytosol	55.65	58.08
CDX84219	Canola	mitochondrion, nucleus	47.7	57.77
CDY01268	Canola	cytosol	54.67	57.06
CDY31680	Canola	mitochondrion, nucleus	44.21	55.91
AT1G32530.1	Thale cress	cytosol	55.23	55.7
AT2G35330.1	Thale cress	endoplasmic reticulum	57.32	55.69
PGSC0003DMT400052886	Potato	nucleus	54.11	53.67
Solyc08g006980.2.1	Tomato	nucleus	51.74	51.24
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	46.16	49.26
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	45.05	47.71
Solyc08g077100.2.1	Tomato	nucleus	25.52	43.26
KXG35515	Sorghum	mitochondrion	33.19	36.96
Zm00001d020292_P001	Maize	mitochondrion, nucleus	32.36	36.19
TraesCS5A01G189000.1	Wheat	mitochondrion	33.19	36.12
TraesCS5D01G202000.1	Wheat	mitochondrion	33.19	36.12
TraesCS5B01G194700.1	Wheat	mitochondrion	33.05	35.96
Os09t0371700-01	Rice	nucleus	10.6	35.68
HORVU5Hr1G058760.1	Barley	plastid	32.08	31.72
OQU93157	Sorghum	plastid	9.21	30.14
KRH02160	Soybean	nucleus	31.24	25.54
KRH20958	Soybean	nucleus, plastid	31.38	25.48
KRH50955	Soybean	nucleus	31.1	25.06
KRH11313	Soybean	nucleus, plastid	30.82	24.97
KRH71485	Soybean	cytosol, endoplasmic reticulum, nucleus	23.85	20.5

Protein Annotations

EntrezGene:100777787	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02003232	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G112600
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR013083	UniProt:K7KPL9	EnsemblPlants:KRH58212	ProteinID:KRH58212	ProteinID:KRH58212.1	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF133	SUPFAM:SSF57850	UniParc:UPI0002960116	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:29929762..29936982

Molecular Weight (calculated)

79794.8 Da

IEP (calculated)

5.544

GRAVY (calculated)

-0.579

Length

717 amino acids

Sequence
(BLAST)

001: MGCTMREKHI RANRRPRSVK PDSDSCDKDA ISKSIAESGL KPFKYHLDLN DSSQSPNSNP NVEETGWGYC TEEQLEEILL KNLEFIYNEA VSKLVALGYD
101: GDVAVKAILR NGHCYGGMDV LTNILHNSLA FLNTNSDGDG GGYSSNGGNL HESEPVFSDL RQLEEYSLAG MVCLLQQVRP HLSKGDAMWC LLMSDLHVGR
201: ASAMEIPVPD NGSTVPATGE GGANSAGVMA PALCRFHGGW GFGNGGGLEF PVNGIFSCGA EMNLQLQRDI EFPKRLNLSP SMKSLLKRNV AMFAAGFRAN
301: SKQLQAQVKA FPGRSTAPNL DSLDVSGTEV LAEQSGGDSE NLDNQDAVNS VLSKFRDLNL DENLDLVAED QKDEVIVSLF HQIRDLEKQV NERKDWAHQK
401: AMQAARKLSS DLTELKMLRM EREETQKLKK GKPELEDTTM KRLSEMENAL RKASGQLDLA NAAVRRLETE NAEMKAEMEA SKLSASESVT ACLEVAKREK
501: KCLKKLLAWE KQKAKLQQDI SDEKEKILKT QEILVQIRQC QKEAEVKWKE ELKAKEEALA LVEEERHSKE AAESNNKRKL ETLRLKIEID FQRHKDDLLR
601: LEQELSRLKA SAQSAELHNQ SSTSPTSDSE GAKPQRETIA RLLQELDNLE DLSEKEVNSN RECIVCMKDE VSIVFLPCAH QVMCASCSDE YGRKGKAICP
701: CCRVQIQQRI RVFGASS

Best Arabidopsis Sequence Match ( AT2G35330.1 )
(BLAST)

001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.