Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13330.1 | KRH04325 | AT1G32530.1 | 19187040 |
| AT1G13330.1 | KRH28281 | AT1G32530.1 | 19187040 |
| AT1G13330.1 | KRH58212 | AT1G32530.1 | 19187040 |
| AT1G13330.1 | KRH74183 | AT4G29170.1 | 16763194 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH45246 | Soybean | cytosol | 95.15 | 95.58 |
| VIT_01s0011g03320.t01 | Wine grape | cytosol | 72.69 | 73.01 |
| Solyc05g009560.2.1 | Tomato | cytosol | 71.37 | 72.65 |
| AT1G13330.1 | Thale cress | nucleus | 71.81 | 72.12 |
| CDY19376 | Canola | cytosol | 70.93 | 71.24 |
| Bra019825.1-P | Field mustard | cytosol | 70.48 | 70.8 |
| CDX97992 | Canola | cytosol | 70.48 | 70.8 |
| EER91004 | Sorghum | cytosol | 68.28 | 68.28 |
| TraesCS4B01G045000.1 | Wheat | nucleus | 67.4 | 67.4 |
| TraesCS4A01G269200.1 | Wheat | nucleus | 66.96 | 66.96 |
| Zm00001d013447_P001 | Maize | cytosol | 66.52 | 66.52 |
| PGSC0003DMT400033753 | Potato | cytosol | 40.97 | 66.43 |
| GSMUA_Achr10P... | Banana | cytosol | 66.08 | 66.37 |
| TraesCS4D01G044700.1 | Wheat | cytosol | 66.08 | 66.08 |
| Zm00001d033716_P001 | Maize | cytosol | 60.35 | 62.27 |
| HORVU4Hr1G007340.5 | Barley | nucleus | 66.08 | 61.98 |
| CDY19381 | Canola | endoplasmic reticulum | 11.89 | 54.0 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:100813353 | MapMan:13.3.6.4.5.2 | EMBL:ACUP02000348 | ncoils:Coil | EnsemblPlantsGene:GLYMA_01G083100 |
| GO:GO:0000003 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0007049 | GO:GO:0007131 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | InterPro:Hop2 | UniProt:I1J6M0 | InterPro:IPR036388 |
| EnsemblPlants:KRH75396 | ProteinID:KRH75396 | ProteinID:KRH75396.1 | PFAM:PF07106 | PANTHER:PTHR15938 | UniParc:UPI00023370B9 |
| InterPro:WH-like_DNA-bd_sf | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:24170049..24172107
Molecular Weight (calculated)
26321.3 Da
IEP (calculated)
5.308
GRAVY (calculated)
-0.907
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKSDSAEA IVLNFVNEQN RPVNAQNVAD ALQKFNLKKA AIQKALDILA DGKRISFKEF GKQKIYLARQ DQFQIPNTEE LNHMKKQNAD LQKQLEDQKK
101: ATSEVEAEIK SLQSNLTLEQ IFEREVNLRL EVQEMEDKLT KLRGGVTLVK PEERKAVENM LSEMIGQWRK RKRMFKDLWD TLTENSPKDP KEFQEELGIE
201: YDEEDVGVSL QSYNDLIQQG QKRPRGQ
101: ATSEVEAEIK SLQSNLTLEQ IFEREVNLRL EVQEMEDKLT KLRGGVTLVK PEERKAVENM LSEMIGQWRK RKRMFKDLWD TLTENSPKDP KEFQEELGIE
201: YDEEDVGVSL QSYNDLIQQG QKRPRGQ
001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ
Arabidopsis Description
HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.