CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04325
KRH28281
KRH58212
KRH74183

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13330.1	KRH04325	AT1G32530.1	19187040
AT1G13330.1	KRH28281	AT1G32530.1	19187040
AT1G13330.1	KRH58212	AT1G32530.1	19187040
AT1G13330.1	KRH74183	AT4G29170.1	16763194

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75396	Soybean	cytosol	95.58	95.15
Solyc05g009560.2.1	Tomato	cytosol	74.34	75.34
AT1G13330.1	Thale cress	nucleus	74.78	74.78
VIT_01s0011g03320.t01	Wine grape	cytosol	74.34	74.34
CDY19376	Canola	cytosol	73.45	73.45
Bra019825.1-P	Field mustard	cytosol	73.01	73.01
CDX97992	Canola	cytosol	73.01	73.01
EER91004	Sorghum	cytosol	70.35	70.04
TraesCS4B01G045000.1	Wheat	nucleus	69.47	69.16
TraesCS4A01G269200.1	Wheat	nucleus	69.03	68.72
GSMUA_Achr10P...	Banana	cytosol	68.58	68.58
PGSC0003DMT400033753	Potato	cytosol	42.48	68.57
Zm00001d013447_P001	Maize	cytosol	68.58	68.28
TraesCS4D01G044700.1	Wheat	cytosol	68.14	67.84
Zm00001d033716_P001	Maize	cytosol	62.39	64.09
HORVU4Hr1G007340.5	Barley	nucleus	68.14	63.64
CDY19381	Canola	endoplasmic reticulum	11.95	54.0

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100810135	MapMan:13.3.6.4.5.2	EMBL:ACUP02005015	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G260400
GO:GO:0000003	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049	GO:GO:0007131	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:Hop2	UniProt:I1KWU1	InterPro:IPR036388
EnsemblPlants:KRH45246	ProteinID:KRH45246	ProteinID:KRH45246.1	PFAM:PF07106	PANTHER:PTHR15938	SUPFAM:SSF46785
UniParc:UPI000233828A	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:23847907..23850317

Molecular Weight (calculated)

26158.1 Da

IEP (calculated)

5.331

GRAVY (calculated)

-0.939

Length

226 amino acids

Sequence
(BLAST)

001: MAPKSDSAEA IVLNFVNEQN RPVNAQNVAD ALQKFNLKKA AIQKALDNLA DGGRISFKEY GKQKIYLARQ DQFQIPNTEE LNQMKEQNAE LQKQLEDQKK
101: ATSEVEAEIK SLQSNLTLEQ IFEREVNLRL EVQEMEEKLT KLRGGVTLVK PEERKAVENM LSEMIGQWRK RKRMFKDLWD TLTENSPKDP KEFKEELGIE
201: YDEDVGVSLQ SYNDLIQQGK KRPRGK

Best Arabidopsis Sequence Match ( AT1G13330.1 )
(BLAST)

001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ

Arabidopsis Description

HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.