Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005140_P003 | |
| Zm00001d020292_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13330.1 | Zm00001d020292_P001 | AT1G32530.1 | 19187040 |
| AT1G13330.1 | Zm00001d005140_P003 | AT4G29170.1 | 16763194 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91004 | Sorghum | cytosol | 89.09 | 86.34 |
| Zm00001d013447_P001 | Maize | cytosol | 86.82 | 84.14 |
| TraesCS4D01G044700.1 | Wheat | cytosol | 81.36 | 78.85 |
| TraesCS4A01G269200.1 | Wheat | nucleus | 80.91 | 78.41 |
| TraesCS4B01G045000.1 | Wheat | nucleus | 80.45 | 77.97 |
| HORVU4Hr1G007340.5 | Barley | nucleus | 79.09 | 71.9 |
| GSMUA_Achr10P... | Banana | cytosol | 68.18 | 66.37 |
| CDY19376 | Canola | cytosol | 64.55 | 62.83 |
| KRH45246 | Soybean | cytosol | 64.09 | 62.39 |
| Solyc05g009560.2.1 | Tomato | cytosol | 62.73 | 61.88 |
| CDX97992 | Canola | cytosol | 63.18 | 61.5 |
| VIT_01s0011g03320.t01 | Wine grape | cytosol | 63.18 | 61.5 |
| Bra019825.1-P | Field mustard | cytosol | 63.18 | 61.5 |
| AT1G13330.1 | Thale cress | nucleus | 62.73 | 61.06 |
| KRH75396 | Soybean | cytosol | 62.27 | 60.35 |
| PGSC0003DMT400033753 | Potato | cytosol | 38.18 | 60.0 |
| CDY19381 | Canola | endoplasmic reticulum | 7.73 | 34.0 |
Protein Annotations
| EnsemblPlants:Zm00001d033716_P001 | EnsemblPlants:Zm00001d033716_T001 | EnsemblPlantsGene:Zm00001d033716 | Gene3D:1.10.10.10 | GO:GO:0000003 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0007049 | GO:GO:0007131 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | InterPro:Hop2 | InterPro:IPR036388 | InterPro:WH-like_DNA-bd_sf | ncoils:Coil | PANTHER:PTHR15938 |
| PFAM:PF07106 | ProteinID:ONM08461.1 | UniParc:UPI000843F32F | UniProt:A0A1D6L1Q8 | MapMan:13.3.6.4.5.2 | : |
Description
Homologous-pairing protein 2 homolog
Coordinates
chr1:-:272005935..272007220
Molecular Weight (calculated)
25621.5 Da
IEP (calculated)
6.131
GRAVY (calculated)
-0.895
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLQQNRPLN SQNVADALQK FNLKKTAVQK ALDALADSGQ ISFKEYGKQK IYIARQDQFH IPNGEELEEM KKTNAKLQEE LMDQKKAISE VESEVRGLQS
101: NLTLAEITSK KTKLQSEVGP IFVQVQEMEE TLNKLRSGVT LVKPEDKEII ENSFSEKVNQ WKKRKRMFKE LWDNITENSP KDQKEFKEEL CLEYDEDVDV
201: NLQPYSDMLA SLNKRRKFCR
101: NLTLAEITSK KTKLQSEVGP IFVQVQEMEE TLNKLRSGVT LVKPEDKEII ENSFSEKVNQ WKKRKRMFKE LWDNITENSP KDQKEFKEEL CLEYDEDVDV
201: NLQPYSDMLA SLNKRRKFCR
001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ
Arabidopsis Description
HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.