Factsheet for Bra019825.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra023274.1-P
Bra024159.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13330.1	Bra023274.1-P	AT1G32530.1	19187040
AT1G13330.1	Bra024159.1-P	AT4G29170.1	16763194

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97992	Canola	cytosol	100.0	100.0
AT1G13330.1	Thale cress	nucleus	89.82	89.82
Solyc05g009560.2.1	Tomato	cytosol	74.34	75.34
KRH45246	Soybean	cytosol	73.01	73.01
KRH75396	Soybean	cytosol	70.8	70.48
VIT_01s0011g03320.t01	Wine grape	cytosol	69.91	69.91
PGSC0003DMT400033753	Potato	cytosol	42.92	69.29
EER91004	Sorghum	cytosol	68.14	67.84
TraesCS4B01G045000.1	Wheat	nucleus	68.14	67.84
TraesCS4A01G269200.1	Wheat	nucleus	67.7	67.4
TraesCS4D01G044700.1	Wheat	cytosol	66.81	66.52
GSMUA_Achr10P...	Banana	cytosol	66.37	66.37
CDY19381	Canola	endoplasmic reticulum	14.6	66.0
Zm00001d013447_P001	Maize	cytosol	65.93	65.64
Zm00001d033716_P001	Maize	cytosol	61.5	63.18
HORVU4Hr1G007340.5	Barley	nucleus	66.81	62.4

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.4.5.2	EnsemblPlantsGene:Bra019825	EnsemblPlants:Bra019825.1	EnsemblPlants:Bra019825.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049	GO:GO:0007131	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0051026	InterPro:Hop2	InterPro:IPR036388
UniProt:M4DTI2	PFAM:PF07106	PANTHER:PTHR15938	SUPFAM:SSF46785	UniParc:UPI000253EBEB	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	:	:	:	:	:

Description

AT1G13330 (E=1e-115) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tat binding protein 1-interacting (InterPro:IPR010776); Has 2425 Blast hits to 2142 proteins in 283 species: Archae - 50; Bacteria - 240; Metazoa - 929; Fungi - 179; Plants - 47; Viruses - 23; Other Eukaryotes - 957 (source: NCBI BLink).

Coordinates

chrA06:-:4154892..4156064

Molecular Weight (calculated)

26337.3 Da

IEP (calculated)

5.628

GRAVY (calculated)

-0.955

Length

226 amino acids

Sequence
(BLAST)

001: MAPKTDNTEA IVLNFVNEQN RPLNTQNAAD ALQKFSLKKT AVQKALDSLA DAGKITFKEY GKQKLYIARQ DQFEIPNTEE LALMKEENAK LQEQVQEKRK
101: TISEVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLI KLREGVTLVR PEDKKAVEDM YSDKINQWRK RKRMFRDVWD TVTENFPRDI KEFKEELGVE
201: YDEDVGLSLQ AYSDLIPHGK KRGRGQ

Best Arabidopsis Sequence Match ( AT1G13330.1 )
(BLAST)

001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ

Arabidopsis Description

HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.