CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER98621
KXG35515
OQU93157

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13330.1	KXG35515	AT1G32530.1	19187040
AT1G13330.1	OQU93157	AT1G32530.1	19187040
AT1G13330.1	EER98621	AT4G29170.1	16763194

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013447_P001	Maize	cytosol	94.71	94.71
Zm00001d033716_P001	Maize	cytosol	86.34	89.09
TraesCS4A01G269200.1	Wheat	nucleus	86.78	86.78
TraesCS4D01G044700.1	Wheat	cytosol	86.34	86.34
TraesCS4B01G045000.1	Wheat	nucleus	86.34	86.34
HORVU4Hr1G007340.5	Barley	nucleus	85.02	79.75
GSMUA_Achr10P...	Banana	cytosol	75.77	76.11
Solyc05g009560.2.1	Tomato	cytosol	69.16	70.4
KRH45246	Soybean	cytosol	70.04	70.35
CDY19376	Canola	cytosol	69.16	69.47
VIT_01s0011g03320.t01	Wine grape	cytosol	69.16	69.47
AT1G13330.1	Thale cress	nucleus	68.72	69.03
KRH75396	Soybean	cytosol	68.28	68.28
CDX97992	Canola	cytosol	67.84	68.14
Bra019825.1-P	Field mustard	cytosol	67.84	68.14
PGSC0003DMT400033753	Potato	cytosol	39.21	63.57
CDY19381	Canola	endoplasmic reticulum	7.93	36.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.4.5.2	EntrezGene:8062915	UniProt:C5WN49	ncoils:Coil	EnsemblPlants:EER91004
ProteinID:EER91004	ProteinID:EER91004.1	GO:GO:0000003	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049
GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0051026
InterPro:Hop2	InterPro:IPR036388	PFAM:PF07106	PANTHER:PTHR15938	EnsemblPlantsGene:SORBI_3001G118800	UniParc:UPI0001A82563
InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002464006.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:9249356..9252427

Molecular Weight (calculated)

26213.1 Da

IEP (calculated)

5.351

GRAVY (calculated)

-0.960

Length

227 amino acids

Sequence
(BLAST)

001: MPPKSDSVEG IVLGFVNEQN RPLNSQNAAD ALQKFNLKKT AVQKALDALA DSGQISFKEY GKQKIYIARQ DQFEIPNGEE LEEMKKRNAK LQEELADQKK
101: AISEVESEVR GLQSNLTLAE ITSKETKLQS EVQEMEEKLN KLRSGVTLVK PEDRKIIENS FAEKVNQWKK RKRMFKELWD NITENSPKDQ KEFKEELGLE
201: YDEDVDVNLQ SYSDMLASLN KRRKISR

Best Arabidopsis Sequence Match ( AT1G13330.1 )
(BLAST)

001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ

Arabidopsis Description

HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.