Factsheet for Solyc05g009560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g006980.2.1
Solyc08g077100.2.1
Solyc12g008680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13330.1	Solyc08g006980.2.1	AT1G32530.1	19187040
AT1G13330.1	Solyc08g077100.2.1	AT1G32530.1	19187040
AT1G13330.1	Solyc12g008680.1.1	AT4G29170.1	16763194

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033753	Potato	cytosol	60.99	97.14
CDY19376	Canola	cytosol	75.78	74.78
Bra019825.1-P	Field mustard	cytosol	75.34	74.34
KRH45246	Soybean	cytosol	75.34	74.34
CDX97992	Canola	cytosol	75.34	74.34
AT1G13330.1	Thale cress	nucleus	74.89	73.89
VIT_01s0011g03320.t01	Wine grape	cytosol	73.99	73.01
KRH75396	Soybean	cytosol	72.65	71.37
EER91004	Sorghum	cytosol	70.4	69.16
TraesCS4B01G045000.1	Wheat	nucleus	69.51	68.28
Zm00001d013447_P001	Maize	cytosol	69.51	68.28
TraesCS4A01G269200.1	Wheat	nucleus	69.06	67.84
TraesCS4D01G044700.1	Wheat	cytosol	68.16	66.96
GSMUA_Achr10P...	Banana	cytosol	67.26	66.37
HORVU4Hr1G007340.5	Barley	nucleus	68.61	63.22
Zm00001d033716_P001	Maize	cytosol	61.88	62.73
CDY19381	Canola	endoplasmic reticulum	11.21	50.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.4.5.2	ncoils:Coil	GO:GO:0000003	GO:GO:0006139	GO:GO:0006259
GO:GO:0007049	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0051026	InterPro:Hop2	InterPro:IPR036388	UniProt:K4BXD0	PFAM:PF07106	PANTHER:PTHR15938
SUPFAM:SSF46785	EnsemblPlantsGene:Solyc05g009560.2	EnsemblPlants:Solyc05g009560.2.1	UniParc:UPI0002766A78	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf

Description

Homologous-pairing protein 2 homolog [Source:Projected from Arabidopsis thaliana (AT1G13330) UniProtKB/Swiss-Prot;Acc:Q9FX64]

Coordinates

chr5:-:3765181..3767193

Molecular Weight (calculated)

25947.8 Da

IEP (calculated)

5.990

GRAVY (calculated)

-0.977

Length

223 amino acids

Sequence
(BLAST)

001: MAPKADNTEG IVLNFVNEQN RPLNVQNAAD ALQKFNLKKA AVQKALDNLC DSGKISFKEY GKQKIYLARQ DQFDIPDTEE LNRMKEENAN LQEKLNEQKK
101: AISEVEAEMK SLQSNLTMEE IHAKESKLRK EVDEMEKKLI KLREGVTLVS PEERKAIEGL YSESLNQWRR RKRMFRDVWD AITENSPKNP KEFKEELGVE
201: YDEDVGVNFQ SFADLIQHGK KRR

Best Arabidopsis Sequence Match ( AT1G13330.1 )
(BLAST)

001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ

Arabidopsis Description

HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.