Factsheet for TraesCS4A01G269200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G174300.1
TraesCS5A01G189000.1
TraesCS5B01G171700.1
TraesCS5B01G194700.1
TraesCS5D01G178900.1
TraesCS5D01G202000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13330.1	TraesCS5A01G189000.1	AT1G32530.1	19187040
AT1G13330.1	TraesCS5B01G194700.1	AT1G32530.1	19187040
AT1G13330.1	TraesCS5D01G202000.1	AT1G32530.1	19187040
AT1G13330.1	TraesCS5A01G174300.1	AT4G29170.1	16763194
AT1G13330.1	TraesCS5B01G171700.1	AT4G29170.1	16763194
AT1G13330.1	TraesCS5D01G178900.1	AT4G29170.1	16763194

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G045000.1	Wheat	nucleus	99.56	99.56
TraesCS4D01G044700.1	Wheat	cytosol	98.68	98.68
HORVU4Hr1G007340.5	Barley	nucleus	95.59	89.67
EER91004	Sorghum	cytosol	86.78	86.78
Zm00001d013447_P001	Maize	cytosol	85.46	85.46
Zm00001d033716_P001	Maize	cytosol	78.41	80.91
GSMUA_Achr10P...	Banana	cytosol	76.65	76.99
VIT_01s0011g03320.t01	Wine grape	cytosol	70.04	70.35
Solyc05g009560.2.1	Tomato	cytosol	67.84	69.06
KRH45246	Soybean	cytosol	68.72	69.03
AT1G13330.1	Thale cress	nucleus	67.4	67.7
CDX97992	Canola	cytosol	67.4	67.7
Bra019825.1-P	Field mustard	cytosol	67.4	67.7
KRH75396	Soybean	cytosol	66.96	66.96
CDY19376	Canola	cytosol	66.52	66.81
PGSC0003DMT400033753	Potato	cytosol	38.33	62.14
CDY19381	Canola	endoplasmic reticulum	7.93	36.0

Protein Annotations

EnsemblPlants:TraesCS4A01G269200.1	EnsemblPlantsGene:TraesCS4A01G269200	Gene3D:1.10.10.10	GO:GO:0000003	GO:GO:0006139	GO:GO:0006259
GO:GO:0007049	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0051026	InterPro:Hop2	InterPro:IPR036388	InterPro:WH-like_DNA-bd_sf	ncoils:Coil	PANTHER:PTHR15938
PFAM:PF07106	MapMan:13.3.6.4.5.2	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:581196871..581204088

Molecular Weight (calculated)

26374.3 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.992

Length

227 amino acids

Sequence
(BLAST)

001: MPPKSDSVEG IVLNFVNEQN RPLNSQNVAD ALQKFSLKKT AVQKGLDALA DSGQISFKEY GKQKIYLARQ DQFDIPNGEE LEEMKKANSK LQEELAEQKK
101: ITSEVESEIK GLQSNLTLEE IRSKEARLQS EVQEMEEKLK KLQSGVILVK PEDKKIIEET FSEKANQWRK RKRMFKELWD NITENSPKDQ KEFKEELGLE
201: YDEDVDVNFQ PYSEMLASLN KRRKVSR

Best Arabidopsis Sequence Match ( AT1G13330.1 )
(BLAST)

001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ

Arabidopsis Description

HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.