Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13330.1 | CDX93827 | AT1G32530.1 | 19187040 |
| AT1G13330.1 | CDY01268 | AT1G32530.1 | 19187040 |
| AT1G13330.1 | CDX80742 | AT4G29170.1 | 16763194 |
| AT1G13330.1 | CDY30231 | AT4G29170.1 | 16763194 |
| AT1G13330.1 | CDY47782 | AT4G29170.1 | 16763194 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033753 | Potato | cytosol | 42.0 | 15.0 |
| Bra019825.1-P | Field mustard | cytosol | 66.0 | 14.6 |
| CDX97992 | Canola | cytosol | 66.0 | 14.6 |
| CDY19376 | Canola | cytosol | 66.0 | 14.6 |
| AT1G13330.1 | Thale cress | nucleus | 58.0 | 12.83 |
| KRH45246 | Soybean | cytosol | 54.0 | 11.95 |
| KRH75396 | Soybean | cytosol | 54.0 | 11.89 |
| Solyc05g009560.2.1 | Tomato | cytosol | 50.0 | 11.21 |
| VIT_01s0011g03320.t01 | Wine grape | cytosol | 46.0 | 10.18 |
| GSMUA_Achr10P... | Banana | cytosol | 44.0 | 9.73 |
| EER91004 | Sorghum | cytosol | 36.0 | 7.93 |
| TraesCS4A01G269200.1 | Wheat | nucleus | 36.0 | 7.93 |
| TraesCS4B01G045000.1 | Wheat | nucleus | 36.0 | 7.93 |
| TraesCS4D01G044700.1 | Wheat | cytosol | 36.0 | 7.93 |
| Zm00001d033716_P001 | Maize | cytosol | 34.0 | 7.73 |
| Zm00001d013447_P001 | Maize | cytosol | 34.0 | 7.49 |
| HORVU4Hr1G007340.5 | Barley | nucleus | 36.0 | 7.44 |
Protein Annotations
| EnsemblPlants:CDY19381 | EnsemblPlantsGene:GSBRNA2T00008919001 | ProteinID:CDY19381 | ProteinID:CDY19381.1 | UniParc:UPI0004EDC680 | UniProt:A0A078G222 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC05g08900DBnaC05g08900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G222]
Coordinates
chrLK032095:-:436287..436815
Molecular Weight (calculated)
5819.9 Da
IEP (calculated)
4.810
GRAVY (calculated)
-0.152
Length
50 amino acids
Sequence
(BLAST)
(BLAST)
1: MFNNITYLIN HIISLFFFEE LGVEYDEDVG LSLQAYSDLI PHGKKRSRGQ
001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ
Arabidopsis Description
HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.