Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G29170.1 | Thale cress | cytosol | 66.39 | 34.35 |
| GSMUA_Achr9P00140_001 | Banana | cytosol | 52.94 | 32.81 |
| VIT_11s0016g02770.t01 | Wine grape | cytosol | 57.14 | 32.38 |
| KRH74183 | Soybean | cytosol | 57.98 | 31.65 |
| Os09t0280600-01 | Rice | nucleus | 53.78 | 30.92 |
| EER98621 | Sorghum | cytosol | 52.1 | 29.95 |
| TraesCS5A01G174300.1 | Wheat | cytosol | 51.26 | 29.47 |
| TraesCS5B01G171700.1 | Wheat | nucleus | 51.26 | 29.47 |
| TraesCS5D01G178900.1 | Wheat | cytosol | 51.26 | 29.47 |
| Solyc12g008680.1.1 | Tomato | cytosol | 57.98 | 28.51 |
| PGSC0003DMT400000930 | Potato | cytosol, golgi, nucleus | 57.98 | 27.94 |
| CDY30231 | Canola | mitochondrion | 65.55 | 26.09 |
| CDY47782 | Canola | cytosol, golgi, mitochondrion, plastid | 66.39 | 23.58 |
| Zm00001d005140_P003 | Maize | golgi, mitochondrion, nucleus | 50.42 | 23.17 |
Protein Annotations
| EnsemblPlants:CDX80742 | EnsemblPlantsGene:GSBRNA2T00134100001 | InterPro:Mnd1 | ncoils:Coil | PFAM:PF03962 | ProteinID:CDX80742 |
| ProteinID:CDX80742.1 | UniParc:UPI0004EDC35C | MapMan:13.3.6.4.5.1 | : | : | : |
Description
BnaC08g05760D
Coordinates
chrLK031822:+:2017017..2017687
Molecular Weight (calculated)
13491.2 Da
IEP (calculated)
4.617
GRAVY (calculated)
0.188
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQIFYDSQD FFLSVKDVIQ SLVDDDLVAK DKIGISVCFW SLSICAGNQL RSVLQKLEAD HQGSNKRLAE LVDQCEALNK GREETISISC VDDSHFNGLL
101: MIYIFVIASR NKYICFLFS
101: MIYIFVIASR NKYICFLFS
001: MSKKRGLSLE EKREKMLQIF YESQDFFLLK ELEKMGPKKG VISQSVKDVI QSLVDDDLVA KDKIGISIYF WSLPSCAGNQ LRSVRQKLES DLQGSNKRLA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKS
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKS
Arabidopsis Description
MND1Meiotic nuclear division protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.