Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, golgi
Predictor Summary:
Predictor Summary:
- nucleus 3
- golgi 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g008680.1.1 | Tomato | cytosol | 85.83 | 87.6 |
| KRH74183 | Soybean | cytosol | 68.42 | 77.52 |
| Os09t0280600-01 | Rice | nucleus | 64.78 | 77.29 |
| GSMUA_Achr9P00140_001 | Banana | cytosol | 59.11 | 76.04 |
| EER98621 | Sorghum | cytosol | 63.16 | 75.36 |
| TraesCS5A01G174300.1 | Wheat | cytosol | 63.16 | 75.36 |
| TraesCS5B01G171700.1 | Wheat | nucleus | 63.16 | 75.36 |
| TraesCS5D01G178900.1 | Wheat | cytosol | 63.16 | 75.36 |
| VIT_11s0016g02770.t01 | Wine grape | cytosol | 63.97 | 75.24 |
| AT4G29170.1 | Thale cress | cytosol | 67.61 | 72.61 |
| Bra024159.1-P | Field mustard | cytosol | 63.56 | 72.35 |
| Zm00001d005140_P003 | Maize | golgi, mitochondrion, nucleus | 62.75 | 59.85 |
| CDX80742 | Canola | cytosol | 27.94 | 57.98 |
| CDY30231 | Canola | mitochondrion | 68.42 | 56.52 |
| CDY47782 | Canola | cytosol, golgi, mitochondrion, plastid | 69.64 | 51.34 |
Protein Annotations
| EntrezGene:102581886 | MapMan:13.3.6.4.5.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006302 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009553 |
| GO:GO:0009555 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010212 | GO:GO:0016020 | GO:GO:0016021 |
| UniProt:M0ZHL4 | InterPro:Mnd1 | PFAM:PF03962 | EnsemblPlantsGene:PGSC0003DMG400000348 | PGSC:PGSC0003DMG400000348 | EnsemblPlants:PGSC0003DMT400000930 |
| PIRSF:PIRSF026991 | TMHMM:TMhelix | UniParc:UPI000295E358 | : | : | : |
Description
Meiotic coiled-coil protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000348]
Coordinates
chr12:-:3855340..3861392
Molecular Weight (calculated)
28395.9 Da
IEP (calculated)
4.963
GRAVY (calculated)
-0.483
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKRGLSLD EKREKMLQIF YDSQGFFLLK ELEKSGPKKG VISQSVKDVI QSLVDDDLVF KDKIGTSVYF WSLPSCAGNQ VSVWINLCTC LSYLFSAASY
101: MMFIQQLRTV YKKLETDLQN NNKRHTELVE QCKALKKGRE ESDAREEALN ELKSIEQKHK ELKEELMQYA DNDPATIEAM KKAIEVAHSA ANRWTDNIFT
201: LRQWCSNNFP QAKEQLDQLY NEVGITDDFD YLELPAVVPL AVTEGEL
101: MMFIQQLRTV YKKLETDLQN NNKRHTELVE QCKALKKGRE ESDAREEALN ELKSIEQKHK ELKEELMQYA DNDPATIEAM KKAIEVAHSA ANRWTDNIFT
201: LRQWCSNNFP QAKEQLDQLY NEVGITDDFD YLELPAVVPL AVTEGEL
001: MSKKRGLSLE EKREKMLQIF YESQDFFLLK ELEKMGPKKG VISQSVKDVI QSLVDDDLVA KDKIGISIYF WSLPSCAGNQ LRSVRQKLES DLQGSNKRLA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA
Arabidopsis Description
MND1Meiotic nuclear division protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.