Factsheet for Bra024159.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002334.1-P
Bra004222.1-P
Bra006580.1-P
Bra019825.1-P
Bra023274.1-P
Bra023796.1-P
Bra024159.1-P
Bra025394.1-P
Bra036215.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29170.1	Bra019825.1-P	AT1G13330.1	16763194
AT4G29170.1	Bra023274.1-P	AT1G32530.1	19187040
AT4G29170.1	Bra004222.1-P	AT1G67370.1	17937504
AT4G29170.1	Bra023796.1-P	AT3G22880.1	17937504
AT4G29170.1	Bra025394.1-P	AT3G29350.1	17937504
AT4G29170.1	Bra036215.1-P	AT3G29350.1	17937504
AT4G29170.1	Bra024159.1-P	AT4G29170.1	17937504
AT4G29170.1	Bra002334.1-P	AT5G20850.1	17937504
AT4G29170.1	Bra006580.1-P	AT5G20850.1	17937504

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G29170.1	Thale cress	cytosol	88.02	83.04
VIT_11s0016g02770.t01	Wine grape	cytosol	70.97	73.33
GSMUA_Achr9P00140_001	Banana	cytosol	64.52	72.92
CDY30231	Canola	mitochondrion	99.54	72.24
KRH74183	Soybean	cytosol	70.05	69.72
EER98621	Sorghum	cytosol	64.98	68.12
Os09t0280600-01	Rice	nucleus	64.52	67.63
Solyc12g008680.1.1	Tomato	cytosol	73.27	65.7
TraesCS5A01G174300.1	Wheat	cytosol	62.67	65.7
TraesCS5B01G171700.1	Wheat	nucleus	62.67	65.7
TraesCS5D01G178900.1	Wheat	cytosol	62.67	65.7
PGSC0003DMT400000930	Potato	cytosol, golgi, nucleus	72.35	63.56
Zm00001d005140_P003	Maize	golgi, mitochondrion, nucleus	62.67	52.51

Protein Annotations

MapMan:13.3.6.4.5.1	EnsemblPlantsGene:Bra024159	EnsemblPlants:Bra024159.1	EnsemblPlants:Bra024159.1-P	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006302
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009553	GO:GO:0009555
GO:GO:0009628	GO:GO:0009987	GO:GO:0010212	UniProt:M4E5V5	InterPro:Mnd1	PFAM:PF03962
PIRSF:PIRSF026991	UniParc:UPI0002540CB7	SEG:seg	:	:	:

Description

AT4G29170 (E=4e-103) ATMND1 | ATMND1

Coordinates

chrA03:+:27248889..27250283

Molecular Weight (calculated)

24738.0 Da

IEP (calculated)

4.540

GRAVY (calculated)

-0.596

Length

217 amino acids

Sequence
(BLAST)

001: MLQIFYDSQD FFLLKELEKM GPKKGVISQS VKDVIQSLVD DDLVAKDKIG ISVYFWSLPS CAGNQLRSVR QKLESDLQGS NKKLAELVDQ CDALKKGREE
101: SEERTEALAH LQDIEKKHKE LKNEMVQFAD NDPATLEAMR AAIEVAHQSA NRWTDNIFTL RQWCSNNFPQ AKEQLEHLYT EAGITEDFDY LELSSFPLSS
201: SSHDPETPKQ LLVEDQA

Best Arabidopsis Sequence Match ( AT4G29170.1 )
(BLAST)

001: MSKKRGLSLE EKREKMLQIF YESQDFFLLK ELEKMGPKKG VISQSVKDVI QSLVDDDLVA KDKIGISIYF WSLPSCAGNQ LRSVRQKLES DLQGSNKRLA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA

Arabidopsis Description

MND1Meiotic nuclear division protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.